Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05855 ATGATGAAATCAGGGTTGGGAAATGAAGAGAAAAAACAGTTGAAAAAGCCAGCACAAGCAAGTTCAAGAAAAGGCTGCATGCGAGGCAAAGGTGGACCTGAAAACGCCAGCTGCACTTACAAAGGTGTTAGGCAGAGAACCTGGGGCAAATGGGTGGCTGAAATCCGCGAACCTAACCGCGGCGCTCGTCTTTGGCTCGGTACTTTCGAAACTTCTCATGATGCTGCTTTAGCTTATGATGCTGCTGCTCGTAAGCTTTACGGTTCTGAAGCAAAACTCAATCTTCCTGAACTTTCTCCTCGTTCTGTTGCATCCACTGGGACAATATCACAAACACCTCCCATGCAACATCAACCAATTCAATACCAACAAATCCAAGTTGAACCCAACAACCTCAACAACAACAACAGCTTCAATATGTCAAATGTCAATCCATGCAACAACATCAACATGACCAACATGAACAACATGACCAACATGAGCAACATGGACAACATGATGATCAACAACAATAACCTCAACAACACTGTCCACAGCACTGTTTATGTTGGTGATATTGGACCAATATATAACAGTGACAATTCTGTTGTGTCATTTCCAATGGATGTTCCAAACACAATGGAACAACAAGTTGTTGATCCAAGCTACAACATAATTGATAATTCAAAGGGTATTATGGAAGGTAATGATTCATTTTTTGGAACAATGAATTATGAAAGCACCATGCCAGTGATTGATGATGATTCAATCTGGAGAGAAGCTGCTATGTCTCTGGATGCTGCAATTTCAATGGATTATCCAATGATTACTGATCCTGATGGAATATATAACTCTGCTGGAAATTTCAATGGTTGGGATTCTCTACAAACTCCATGGTGCATGTAA 885 0.4102 MMKSGLGNEEKKQLKKPAQASSRKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFETSHDAALAYDAAARKLYGSEAKLNLPELSPRSVASTGTISQTPPMQHQPIQYQQIQVEPNNLNNNNSFNMSNVNPCNNINMTNMNNMTNMSNMDNMMINNNNLNNTVHSTVYVGDIGPIYNSDNSVVSFPMDVPNTMEQQVVDPSYNIIDNSKGIMEGNDSFFGTMNYESTMPVIDDDSIWREAAMSLDAAISMDYPMITDPDGIYNSAGNFNGWDSLQTPWCM 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05855 294 Gene3D AP2/ERF domain 39 97 IPR036955 GO:0003700|GO:0006355
Vivi4g05855 294 MobiDBLite consensus disorder prediction 1 17 - -
Vivi4g05855 294 ProSiteProfiles AP2/ERF domain profile. 39 96 IPR001471 GO:0003700|GO:0006355
Vivi4g05855 294 MobiDBLite consensus disorder prediction 1 38 - -
Vivi4g05855 294 FunFam Ethylene-responsive transcription factor 2 38 97 - -
Vivi4g05855 294 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Vivi4g05855 294 PRINTS Ethylene responsive element binding protein signature 62 78 IPR001471 GO:0003700|GO:0006355
Vivi4g05855 294 SMART rav1_2 39 102 IPR001471 GO:0003700|GO:0006355
Vivi4g05855 294 SUPERFAMILY DNA-binding domain 39 96 IPR016177 GO:0003677
Vivi4g05855 294 CDD AP2 38 98 IPR001471 GO:0003700|GO:0006355
Vivi4g05855 294 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 12 179 - -
Vivi4g05855 294 Pfam AP2 domain 39 88 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05855 Vivi-Chr4 195095051 195096359 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05855 11 114 AP2-EREBP Transcription Factor Family AT1G75490 78.302 6.70e-50 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi4g05855 AP2 5.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05855 - - tpra:123886830 296.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05855 4 195095051 195096359 Vivi4g05855 4 195095051 195096359 ECH
Vivi4g05855 4 195095051 195096359 Vivi4g05855 4 195095051 195096359 PCT