Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05794 ATGAAAATGAAGAGTGGAATAACAGTGACTTTTGTTATGGTGTTGTTTTTGTTGGTGGAGTTAACATTGAGTTTGAGTTCAAGAACTGAAAGGTTAGCGTTATTGGAGCTTCGGTCATCGTTGGGTATAAGGGCGAAAAATTGGCCTATTAAAACTGAACCGTGTCGAAACTGGACTGGTGTTGAATGCAATAACAGTCGAGTTGTTGGTATCAACGTGTCCGGGTTGAAGAGAACTCACAAGGGTCGTCTTACGCCGAATTTTGAAGTGGATTCTCTGGCAAATTTCACGCTATTGGAGTCTTTCAATGCTTCTGGTTTCATGCTTAACGGGTCTATACCAGATTGGTTTGGTGAGAGACTTGGTGCACTCAAAAAGCTTGATTTGGGGTCTTGTTCAATATCTGGTGTGATTCCTGATTCACTTGGTGGTTTGAGTAGTTTGAAGTTTTTGTTACTTTCAGGAAATAATCTTACTAGTAGAGTCCCTTCAAGTTTGGGGGGCTTATCTAGTCTTTCTATTCTTGACCTCTCTGGGAATTTGTTTTCAGGATCAATACCTGAATCTTTCTCTAATCTTGGTAACCTTACAAACCTGGATCTTTCTAATAATTACTTATCTGGGTCTATTCCATCGGAACTCGGTGTCCTTTCAAATCTCCAAATTTTGAACCTGTCTAATAACGCCTTCACTGCTTCGGTTCCTTCTCAGCTAGGCAATCTTTCAAAATTGGTTGAGCTTGATCTTAGTGTGAATTCTCTTTCCGGGCCATTGCCGCGTAGTTTGTTTTCTTCTAGATTTTTCGTCATTCAAGTTATGATTTTAAGTCGAAATTCAATCGATGGTGATCTTCCTGATGCTATATGGTCAATGCCTAGATTGCACTTATTTGATGTATCAGGCAACAGTCTCACTGGTCCACTGCCGAATTTGTCTGGTTTAAATGTTAGCTCAAACGGTGGCGGCGTATTCAATTTATCGAACAATTTTTTCTATGGACCTGTGAATGGTTCGACGGACAAGATTAAAATGATTGATTTGTCTGGAAATTATTTGGATGGCGATGTGCCAGATGGTCTTAGTAATGTTACTCTAGATAGAAATTGCCTACAGAAGATTTCAAACCAGAGGAATTTGAAAGAGTGTAGAATGTTTTATGCCCAGAAAAATGTAACCTTTGATTATGGTAAGCATGAGACAGAAAAAAAGAAACGAGTAATATTCATACTGGCAGGTATATTTGGTGGATTGGGATTTATTGTGCTACTGGTATTGGTCCTGATATTGGTTCTAAAACAATGTCATAAAAGTAAAGATATGGAAATTGAAAGAGGGACCACAAATGGGGGACCTGTTACAGAAGGGGAAAGTCCTACACCTAAGGATCCTGTTTTCGTAACAGCTGTCGGAGAATCGTTTACTTTCGAACAAATACTCCATTTTACTGGAAATTTCGATGAAGCAAACTTAATAAAACATGGTCATTCTGGAGTCTTTTTCTTCGGAGTTTTGGACAGTGGAGTAACTGTTGTTGTCAAAAGGGTAGATTTAAGTTTATTTAAGAGAGAATCTTACATTGCAGAGTTGGGATTGTTAAGCAAGGTTTCGCATGCAAGATTGGTCCCAATTCTAGGACAGTGCATGGATAATGAGAAGGATAAATGTATAGTTTACAAGTATATGATAAATGGAGATTTGGCTGCTTCCTTACATAGAGTCAGTGGTTCAGATGGGAAGTTGCAGTCCCTGGATTGGATCACAAGATTGAAAATTGCAACAGGAGCTGCTGAAGGCCTGGCTTACTTACATGATTGCAGCCCTCCTCTTGTTCACAGAGATATCCGAGCCAGTAGTATACTTCTCGATGATAAATTTGAAGTGCGGCTTGGAAGTTTAAGTGAGGTTGCTGCCCAAGAAGATTTTCATCAGAATGTTGTGTCAAGAGTTTTCAGCAAGCCACTATCTTCTAATCAAGGCAATTCTGGTACATCATCTGTGACGTGTGCTTATGATATCTACTGTTTTGGGAAGATTTTACTCGAGCTTGTTACCGGTAATATCGACATCAGCGAATCAGATGATGCAACCACAAAGGATTGGATAGAGCAAACCTTGAATTACATCACCATATTCGATAAAGAACGGTTGGCTAAGATCGTTGACCCGTCTTTGATAGTGGATGACGACTTATTGGAAGAGGTATGGGCTATGGCAATCGTGGCCAAGTCGTGCCTTAATCCTAAAGCTTCCAAACGACCTCCAATGAAACATGTCCTCAAAGCACTTGAAAATCCATTGAAGATTGTGAGAGAAGAAAGCTTTAGTTCAGCGAAATTGAGAACAACTTCGTCGAATAGATCGTGGAGCACTGCGTTCTTTGGTAGCTGGAGACACAGCTCATCAGACAGTGGTGCAACTGCAACCAATAGAGAGGGTTCTAGTGGCATTAAACAAACAGGAAGAGTAAGTTCTCATGGTAGTGGTGGACATGATCATTCATCTTCGAATAAAAGGTCATCCAATGAAATATTCCCGGAACCGATGGGAATGCAAGACTTGGAGAATGGAGAGTTAAGATGA 2580 0.4008 MKMKSGITVTFVMVLFLLVELTLSLSSRTERLALLELRSSLGIRAKNWPIKTEPCRNWTGVECNNSRVVGINVSGLKRTHKGRLTPNFEVDSLANFTLLESFNASGFMLNGSIPDWFGERLGALKKLDLGSCSISGVIPDSLGGLSSLKFLLLSGNNLTSRVPSSLGGLSSLSILDLSGNLFSGSIPESFSNLGNLTNLDLSNNYLSGSIPSELGVLSNLQILNLSNNAFTASVPSQLGNLSKLVELDLSVNSLSGPLPRSLFSSRFFVIQVMILSRNSIDGDLPDAIWSMPRLHLFDVSGNSLTGPLPNLSGLNVSSNGGGVFNLSNNFFYGPVNGSTDKIKMIDLSGNYLDGDVPDGLSNVTLDRNCLQKISNQRNLKECRMFYAQKNVTFDYGKHETEKKKRVIFILAGIFGGLGFIVLLVLVLILVLKQCHKSKDMEIERGTTNGGPVTEGESPTPKDPVFVTAVGESFTFEQILHFTGNFDEANLIKHGHSGVFFFGVLDSGVTVVVKRVDLSLFKRESYIAELGLLSKVSHARLVPILGQCMDNEKDKCIVYKYMINGDLAASLHRVSGSDGKLQSLDWITRLKIATGAAEGLAYLHDCSPPLVHRDIRASSILLDDKFEVRLGSLSEVAAQEDFHQNVVSRVFSKPLSSNQGNSGTSSVTCAYDIYCFGKILLELVTGNIDISESDDATTKDWIEQTLNYITIFDKERLAKIVDPSLIVDDDLLEEVWAMAIVAKSCLNPKASKRPPMKHVLKALENPLKIVREESFSSAKLRTTSSNRSWSTAFFGSWRHSSSDSGATATNREGSSGIKQTGRVSSHGSGGHDHSSSNKRSSNEIFPEPMGMQDLENGELR 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05794 859 FunFam Predicted protein 457 560 - -
Vivi4g05794 859 Gene3D Ribonuclease Inhibitor 27 186 IPR032675 -
Vivi4g05794 859 PANTHER UNNAMED PRODUCT 91 687 - -
Vivi4g05794 859 FunFam Leucine-rich repeat receptor protein kinase EMS1 187 270 - -
Vivi4g05794 859 Pfam Leucine Rich Repeat 124 145 IPR001611 GO:0005515
Vivi4g05794 859 Gene3D Ribonuclease Inhibitor 187 266 IPR032675 -
Vivi4g05794 859 MobiDBLite consensus disorder prediction 797 830 - -
Vivi4g05794 859 ProSiteProfiles Protein kinase domain profile. 485 767 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g05794 859 MobiDBLite consensus disorder prediction 797 859 - -
Vivi4g05794 859 ProSiteProfiles cAMP/cGMP binding motif profile. 490 543 IPR000595 -
Vivi4g05794 859 SUPERFAMILY Protein kinase-like (PK-like) 465 762 IPR011009 -
Vivi4g05794 859 Pfam Protein tyrosine and serine/threonine kinase 494 760 IPR001245 GO:0004672|GO:0006468
Vivi4g05794 859 Gene3D Phosphorylase Kinase; domain 1 456 560 - -
Vivi4g05794 859 Gene3D Ribonuclease Inhibitor 267 406 IPR032675 -
Vivi4g05794 859 Pfam Leucine rich repeat 153 206 IPR001611 GO:0005515
Vivi4g05794 859 SMART LRR_typ_2 145 168 IPR003591 -
Vivi4g05794 859 SMART LRR_typ_2 241 265 IPR003591 -
Vivi4g05794 859 SMART LRR_typ_2 121 144 IPR003591 -
Vivi4g05794 859 SMART LRR_typ_2 193 215 IPR003591 -
Vivi4g05794 859 SMART LRR_typ_2 169 192 IPR003591 -
Vivi4g05794 859 SMART LRR_typ_2 217 240 IPR003591 -
Vivi4g05794 859 Gene3D Transferase(Phosphotransferase) domain 1 561 784 - -
Vivi4g05794 859 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 90 186 - -
Vivi4g05794 859 FunFam Putative LRR receptor-like serine/threonine-protein kinase 561 782 - -
Vivi4g05794 859 PRINTS Leucine-rich repeat signature 217 230 - -
Vivi4g05794 859 PRINTS Leucine-rich repeat signature 196 209 - -
Vivi4g05794 859 SUPERFAMILY L domain-like 33 357 - -
Vivi4g05794 859 ProSiteProfiles Leucine-rich repeat profile. 195 217 IPR001611 GO:0005515
Vivi4g05794 859 Pfam Leucine rich repeat N-terminal domain 29 64 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05794 Vivi-Chr4 194331843 194336089 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05794 29 653 Miscellaneous Gene Families AT2G16250 46.707 0.0 557
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIV Vivi4g05794 PK_Tyr_Ser-Thr 7.9e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05794 - - gmx:100798381 1078.16