Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05779 ATGGGAATGGGAATATATGTGAAGGATATGTTTTGTTTTATAGGGGAGGGGGGAACTTTTGAGGAGCTACTGACTTATGATCTTGCTATGCAGTCTGATACTGCTGTTGTACTAGACCATGGCACTGATGTCTTCATTTGGCTGATGATACCAAGGAATTTTGTGAAGAAATATGGAGAATATCTTCCAAAAGCTATATGTCTAAAGACTCCCAATGGTGCAGACTGGAAATTAAGTTTGGTAGAAAGTGATGGCAAGATATGGTTTCAAAAGGGTTGGAAAAAATTCGCAGACTATCATTCTCTATATCATGGCCATCTTGTTTTCGAATATGAAAGCACTTCCCGTTTTGAAGTAAGAATCTTTGATAAGAGTGCTTTAAAGATAAAGTATCCTTTCAAAAGAGCTGAAGTCAATAATGAAGAAGATTGTAGAGCAAGTCAAAAGAGAAAAGCTTACTCCTCCTTTGACATTGGAAGCACTAGTTGTGTTAAAAAACACAAAGGAAAACAAGTGAATACAACACTTAAAAGAGCAAAAGAGTTCAAAACATGCAATCCATCATTTGTTGTTGTCATGGGTGCATCTTATGTTGGAAGTCGTTTTCTTTTGGGTGCTGAACTTGTAGCTGATGAAGGAAAAAGTGCCGCTGCTTTGGCTGCATGCAGGACATTGGCTGAAGAGCTGACCCAGTTCCGATTTCCAGCTCCTCGCATCCTCGCATTCAAGGTACAATCTCATGTTGATATATATCATTTTGATGATGAAACTTGGGGAGGAAGTTTTGACATGCCAAAAGAAATGGCACACTCGCATTTAAGAATGGTGACAGATGGAAGATACATTTATTAG 852 0.385 MGMGIYVKDMFCFIGEGGTFEELLTYDLAMQSDTAVVLDHGTDVFIWLMIPRNFVKKYGEYLPKAICLKTPNGADWKLSLVESDGKIWFQKGWKKFADYHSLYHGHLVFEYESTSRFEVRIFDKSALKIKYPFKRAEVNNEEDCRASQKRKAYSSFDIGSTSCVKKHKGKQVNTTLKRAKEFKTCNPSFVVVMGASYVGSRFLLGAELVADEGKSAAALAACRTLAEELTQFRFPAPRILAFKVQSHVDIYHFDDETWGGSFDMPKEMAHSHLRMVTDGRYIY 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05779 283 Gene3D - 35 126 IPR015300 -
Vivi4g05779 283 CDD B3_DNA 47 123 IPR003340 GO:0003677
Vivi4g05779 283 ProSiteProfiles B3 DNA-binding domain profile. 48 125 IPR003340 GO:0003677
Vivi4g05779 283 SMART B3_2 42 125 IPR003340 GO:0003677
Vivi4g05779 283 PANTHER B3 DOMAIN-CONTAINING 38 170 - -
Vivi4g05779 283 Pfam B3 DNA binding domain 47 124 IPR003340 GO:0003677
Vivi4g05779 283 SUPERFAMILY DNA-binding pseudobarrel domain 42 125 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05779 Vivi-Chr4 194226133 194230506 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05779 48 142 B3 DNA Binding Superfamily AT1G49475 40.625 3.15e-16 73.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi4g05779 B3 2.8e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05779 - - vvo:131624168 262.692