Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05775 ATGTTTAATCTTTGGGGGAGTTCTCATCAAGATCAACAAACCAAAGATGCTCTTGCTGATTCCAAGATAAAAGAGCTCAAGGTTGCAATTGGACCCTTATCAGGAAACAGCTTAAAGTACTGCACTGATGCTTGTTTGAGGCGATATCTAGAAGCTCGCAACTGGAATGTCGACAAGTCCAAAAAGATGTTGGAAGATACACTCAAGTGGAGATCAGTCTATAAGCCCGAGAGAATCCGTTGGGACGAGGTTGCAGAGGAAGGGGAAACAGGGAAAGTTTATAGAGCAGGTTTTCATGACAGACATGGAAGAACTGTTCTTATTTTGAGACCGGGAATGCAGAACACTTCTTCAATGGACAATCAGATTAAGCATCTTGTGTATCTTTTGGAAAATGCTATGCTTAATCTTCCACCGGGTCAAGAACAAATGGCTTGGTTGATAGACTTCACAGGGTGGTCAATAACCAACAATGTGCCTCTCAAGTCAGCTAGAGAGACGATCAGTATTCTACAGAATCACTATCCCGAGAGGCTTGGAATAGCTTTTCTTTATAACCCTCCTCGAATTTTCGAAGCTTTTTGGAAGATAGTGAAGTATTTCTTGGATAGCAAGACATTTCAGAAGGTGAAATTTGTGTATCCGAAGAATAAAGATAGCGTGGAGCTCATGAAATCTTATTTTGATGAGGAAAATCTTCCAAGTGAACTAGGTGGAAAAAGCATATTGAACTATAACCACGAGGAATTCTCCAAATTAATGACTCAAGATGATTTAAAATGTGCAGACTTTTGGGGTTCTGATGAAAAGCTCTCAAACCACATGCATTGTGCAGCAGAAGTAGCTCCAGAAGTAGCTACCTGA 864 0.4062 MFNLWGSSHQDQQTKDALADSKIKELKVAIGPLSGNSLKYCTDACLRRYLEARNWNVDKSKKMLEDTLKWRSVYKPERIRWDEVAEEGETGKVYRAGFHDRHGRTVLILRPGMQNTSSMDNQIKHLVYLLENAMLNLPPGQEQMAWLIDFTGWSITNNVPLKSARETISILQNHYPERLGIAFLYNPPRIFEAFWKIVKYFLDSKTFQKVKFVYPKNKDSVELMKSYFDEENLPSELGGKSILNYNHEEFSKLMTQDDLKCADFWGSDEKLSNHMHCAAEVAPEVAT 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05775 287 SUPERFAMILY CRAL/TRIO domain 81 252 IPR036865 -
Vivi4g05775 287 CDD SEC14 89 240 IPR001251 -
Vivi4g05775 287 Pfam CRAL/TRIO domain 89 239 IPR001251 -
Vivi4g05775 287 SUPERFAMILY CRAL/TRIO N-terminal domain 19 83 IPR036273 -
Vivi4g05775 287 PANTHER GH16843P 14 271 - -
Vivi4g05775 287 SMART sec14_4 87 242 IPR001251 -
Vivi4g05775 287 Gene3D - 6 272 IPR036865 -
Vivi4g05775 287 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 81 245 IPR001251 -
Vivi4g05775 287 SMART CRAL_TRIO_N_2 42 67 IPR011074 -
Vivi4g05775 287 Pfam CRAL/TRIO, N-terminal domain 41 66 IPR011074 -
Vivi4g05775 287 FunFam Phosphatidylinositol transfer protein 3 3 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05775 Vivi-Chr4 194215453 194218235 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05775 46 234 Acyl Lipid Metabolism Gene Families AT1G55840 27.488 8.03e-11 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05775 K26544 - gmx:100800854 484.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05775 4 194215453 194218235 Vivi4g05775 4 194215453 194218235 ECH