Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05744 ATGGCCGAAGCAGACTTCGACCACCACAACTCACCTGAGCACGAGAACCAAATCAATGAGAGTAATACGAAAAAGAAGCACCGCAAGAGAAAAAGATCCCGTAAATCGGAACAGAAAGTTGAAAGAGAACAAGAGAATAAAGAAACCGCAGAATCCGAGGAGGAAGAGGAGAAGAATGATGAACAACAAGAAGACAACATCGAAGAAGAAGAGAATAAAGTGGAGAACACGGAGTCGTCTGGAATTATGAGCACCGAGACATTTTCGTCTCTAGGTTTATCTCAGCCTACTTCTATGTCTATTAATGATATGCGTTTCACCCGTATGACTCAGATTCAAGCTAAAGCTATTCCACCGCTATTGATGGGAAAAGATGTTCTTGGTGCTGCAAGAACAGGTGCTGGAAAAACACTTGCGTTTTTAGTTCCGGCTGCTGAATTGTTGTACAATGTTCAGTTCACACCTCGTAATGGAACTGGTGTTGTTGTTATTTGTCCAACTAGAGAGCTTGCCATTCAGACACATGCTGTGGCAAAGGAACTACTCAAGTATCATTCACAAACAATTGGATTGGTTATTGGGGGTTCCGGTAGAAAGGGAGAAGCTGAGCGTATTGTTAAAGGGGTAAATTTGTTGGTTGCAACGCCTGGTCGTCTTCTTGACCACCTTCAGAATACTAAAGGATTCATATATAAAAACTTGAAGTGTCTCATTGCTGATGAAGCAGACAGGATATTGGAAGCAAACTTTGAGGAAGAAATGAAGCAGATCATTAATATACTTCCAAAGAAAAGACAGACGGCTTTGTTTTCAGCCACACAAACAAAGAAGGTTGAAGATCTTGCCCGCTTGTCTTTCCAGACACCTCCTGTCTATGTTGATGTAGATGATGGGAGAAAAAAGGTCACAGTTGAAGGATTGGAACAGGGCTATGTTGTTGTTCCCTGTGCCCAGCGTTTTGTTGCTCTATATACATTCTTGAAGAGATTTCAATCAAAAAAAGTGATGGTGTTTTTCTCTTCATGCAACTCTGTCAAATTCCATGCCGATCTTCTTAAGTTCATTGGATTAGACTGTTTAAATATTCATGGAAAACAAAAGCAGCATGCCCGAACAACTACCTTCTTCAACTTCTGCAAAGCAGAAAATGGGATCTTGCTCTGTACTGATGTTGCTGCTCGTGGACTTGACATACCTGATGTGGACTGGATTGTGCAGTATGATCCACCCGATGAACCAAAGGAATATATCCACAGAGTTGGTAGAACTGCTCGTGGGGAAGGTGGAAAAGGAAATGCTCTACTTTTCCTGATTCCCGAAGAATTGCAATTTCTTCGCTATTTGAAGGCAGCGAAGATTCCTGTGAAAGAGTATGACTTTAATGATAAAAAGCTTGCAAATGTACAATCACACCTGGAGAAGATAGTGGGCAGCGTTTATCATTTGAACACTTTAGCTAAAGACGCATATAGGTCATATATATTGGCATATAATGCACATTCTATGAAGGAAATATTCAATGTTCACCGCCTTGATTTACAGGCTGTTGCTACTTCATTCAGTTTTACAAACCCACCGAAGATAATTCTCAACATAGATAGCAGTGCTTCAAAGCATAGGAAGAAAATTCAAAAAGTGGAAGGAGGAAGAAGACGTTGA 1659 0.4081 MAEADFDHHNSPEHENQINESNTKKKHRKRKRSRKSEQKVEREQENKETAESEEEEEKNDEQQEDNIEEEENKVENTESSGIMSTETFSSLGLSQPTSMSINDMRFTRMTQIQAKAIPPLLMGKDVLGAARTGAGKTLAFLVPAAELLYNVQFTPRNGTGVVVICPTRELAIQTHAVAKELLKYHSQTIGLVIGGSGRKGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLIADEADRILEANFEEEMKQIINILPKKRQTALFSATQTKKVEDLARLSFQTPPVYVDVDDGRKKVTVEGLEQGYVVVPCAQRFVALYTFLKRFQSKKVMVFFSSCNSVKFHADLLKFIGLDCLNIHGKQKQHARTTTFFNFCKAENGILLCTDVAARGLDIPDVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELQFLRYLKAAKIPVKEYDFNDKKLANVQSHLEKIVGSVYHLNTLAKDAYRSYILAYNAHSMKEIFNVHRLDLQAVATSFSFTNPPKIILNIDSSASKHRKKIQKVEGGRRR 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05744 552 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 319 466 IPR001650 -
Vivi4g05744 552 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 86 114 IPR014014 GO:0003724
Vivi4g05744 552 MobiDBLite consensus disorder prediction 1 22 - -
Vivi4g05744 552 Pfam Domain of unknown function (DUF4217) 468 528 IPR025313 -
Vivi4g05744 552 MobiDBLite consensus disorder prediction 77 96 - -
Vivi4g05744 552 FunFam RNA helicase 303 533 - -
Vivi4g05744 552 MobiDBLite consensus disorder prediction 1 96 - -
Vivi4g05744 552 CDD SF2_C_DEAD 307 437 - -
Vivi4g05744 552 Gene3D - 305 546 IPR027417 -
Vivi4g05744 552 SMART ultradead3 105 310 IPR014001 -
Vivi4g05744 552 Coils Coil 26 80 - -
Vivi4g05744 552 MobiDBLite consensus disorder prediction 48 72 - -
Vivi4g05744 552 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 158 448 IPR027417 -
Vivi4g05744 552 SMART DUF4217_3 467 530 IPR025313 -
Vivi4g05744 552 SMART helicmild6 346 427 IPR001650 -
Vivi4g05744 552 Pfam DEAD/DEAH box helicase 110 281 IPR011545 GO:0003676|GO:0005524
Vivi4g05744 552 CDD DEADc_DDX18 97 294 IPR044773 GO:0003724|GO:0005524
Vivi4g05744 552 PANTHER RNA HELICASE 39 467 - -
Vivi4g05744 552 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 117 292 IPR014001 -
Vivi4g05744 552 Pfam Helicase conserved C-terminal domain 322 426 IPR001650 -
Vivi4g05744 552 Gene3D - 37 295 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05744 Vivi-Chr4 193857697 193862478 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05744 70 446 Eukaryotic Initiation Factors Gene Family AT3G19760 26.455 1.24e-43 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05744 K13179 - gmx:100798290 855.514