Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05737 ATGGCAAGTGGGTTTGGGGAATCAACAAGCAGGACACCCCCAAGCCCTCCTTACTCGAGCAACAATAATAACAGTGATGCTGGAAATTTCGAATGCAACATTTGCTTTGACTTAGCGCAAGATCCGATAATTACGTTGTGCGGTCATCTTTTCTGCTGGCCTTGTCTTTACAAATGGCTTCATTTTCACTCGCAGTCGCGAGAGTGTCCCGTGTGTAAGGCGATGGTTGAGGAGGAGAAATTGGTTCCTTTGTATGGGAGAGGGAAAACGTCGACTGATCCGAGATCAAAGTCTATTCCTGGTGTTAATATCCCTCATCGTCCTGCCGGACAGAGACCCGAAACTGCTCCTCCGCCTGAGTCGAATCCGTTTTCTCAACATGGATTTGGATTCACAGGAGGGTTGGGGGGATTGGGAGGATTTGCACCGGCAGCGACTACACGATTTGGAAATTTTACGTTTTCTGCAGGATTTGGTGGTTTTATACCATCTTTATTTAACTTTCAGATGCATGGGTTTCACGGCGGGGCCATGTATGGTGGAGCAGCTGGTTTCCCTTATGGGTTTTCTAATTCATTTCATGGTGGGCATGTTCATAGATATCCCCTGCCAACAGGTCAAGGACAACAAGATTATTATCTGAAGATGCTGCTGATGATTGTTATTTTTTGTGTGGTACTTGCTTTCATTATTGGATAG 699 0.4578 MASGFGESTSRTPPSPPYSSNNNNSDAGNFECNICFDLAQDPIITLCGHLFCWPCLYKWLHFHSQSRECPVCKAMVEEEKLVPLYGRGKTSTDPRSKSIPGVNIPHRPAGQRPETAPPPESNPFSQHGFGFTGGLGGLGGFAPAATTRFGNFTFSAGFGGFIPSLFNFQMHGFHGGAMYGGAAGFPYGFSNSFHGGHVHRYPLPTGQGQQDYYLKMLLMIVIFCVVLAFIIG 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05737 232 SMART ring_2 32 72 IPR001841 -
Vivi4g05737 232 Pfam Zinc finger, C3HC4 type (RING finger) 32 72 IPR018957 GO:0046872
Vivi4g05737 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 86 IPR013083 -
Vivi4g05737 232 ProSiteProfiles Zinc finger RING-type profile. 32 73 IPR001841 -
Vivi4g05737 232 ProSitePatterns Zinc finger RING-type signature. 47 56 IPR017907 -
Vivi4g05737 232 MobiDBLite consensus disorder prediction 1 22 - -
Vivi4g05737 232 SUPERFAMILY RING/U-box 29 85 - -
Vivi4g05737 232 CDD RING-HC_AtRMA-like 30 74 - -
Vivi4g05737 232 MobiDBLite consensus disorder prediction 86 123 - -
Vivi4g05737 232 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 19 227 IPR045103 GO:0005783|GO:0006511|GO:0061630
Vivi4g05737 232 FunFam E3 ubiquitin-protein ligase RNF185 isoform X2 16 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05737 Vivi-Chr4 193759223 193760811 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05737 30 215 C3H Transcription Factor Family AT1G19310 67.876 9.93e-87 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05737 K10666 - qsa:O6P43_018852 386.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05737 4 193759223 193760811 Vivi2g03114 2 131440933 131441550 ECH
Vivi4g05737 4 193759223 193760811 Vivi4g05737 4 193759223 193760811 ECH