Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05733 ATGAAGAAAAATAACTTCACCATGAATCATTTTGTGTTTAACTTCATTTTCTTCATACTGAACATTTTTCTTTCATTAAAAACCAAGGCACAACAGAATTACTCAGGAAATTCGATATTCACCTGCGAGAATAGCGATGATACGGGACCTTCGCCCGCATTTCTTTACACCTGCAATGGCTTCAACAAATCCTGCATGGCTTTTCTGAGCTTCAGATCCAAAACTCCTTATAACTCCGTCAACGCGATTTCCAACCTCACGTCATCAAACCCGAAAGAGCTCGCCCGAATCAATGGTGCCACTTTGCTGACAGTTTTCCCGCCTGGTAAAGAGGTTATTGTTCCTGTGAACTGCTCTTGTTTAACCAATAATTATTATCAAGCTGAAACGAAATATGTATTGGGTCAAAACCCGACATATTTCACAGTAGCAAACGATACGTTCCAGGGTTTGACGACATGTGATTCTCTGATGCGTGCGAATCCATATGGGGTACTTGATTTGCATCCAGGAATGGAGTTACAGGTTCTACTTCGATGCGCTTGTCCAACATATCATCAGAAAACAAATGGCACCAAGTATTTACTCACATACTCGGTAACCTGGGGGGATAACATTTCAAATATTGCTACTAGATTCAATGTAACAGAAGGTAATCTAATTGATGCTAATGGTTTTTCCTCGCAAACTCAAGTACTTTATCCATTCACAACTGTTCTGATTCCTTTTCCAAGTGAACCGGGGAGTCCAACAACCATAGTTGCTAATGATCCCCCAATCCCTCAAGATTGCAGCCTCAAAAAGTGCAAGTCAAAGAAAAAAACACTCCCCATTGCTTTAACCACCTCGGTGCTGGTTCTGTGTGCCTTCTTGTTTGTGCTGGTTCTGTTTTTGCTAAGAAAGAGATCAGTAGGGTTGTCTAAGCGACGTGCGCGAGGTGAGAAAAAAACGGAGGTGTTTTCAGAAGAGATTCGTGAGGAAATAGCGATCATTGAACATCTCTCCAAAGTGTATAGGTTTGAGGAAATAAAAGAGGCAACTGAGAATTTTAGTTCAAAGAATAGAATCGAAGGTTCTTTATTCCGCGGTGTATTCAACAATGGCAAGGAAGTTTTGGCTGTTAAAAGAATGAGAGGAGATGTTTCTAAAGAGGTCAATTTGCTGAAAAGGATCAATCATTTCAACCTGATAAAGCTGCAGGGTTACTGTGAAAACAAAGCTTGCATCTATCTTGTTTATGAATACATGGAAAATGGATCTTTAAGGGAATGGCTTAGCAAGAATAGTTCTGTAGAGCACCAAAGTTGGGGAAGGAGGATACAGATTGCTGTGGATATTGCCAATGGACTTCAATATCTTCACAACTTCACAGAACCTAGCTATGTACACAAGGACATAAACAGTGGAAACATTCTACTAAACAAGGATTTAAGAGCCAAGATAGCAAAATTTGCACTTGTTGAAGAATCAGAGAGTATGGTTACTTCTGATTGTCCCACATCACATGTTGTAGGATCGGCCGGTTATTTAGCTCCCGAGTATCTGGAAGCAGGAGTAGTCAGTACCAAAATGGATGTCTATGCCTTTGGAGTGGTGCTGTTGGAATTGATCACTGGCAAAGATTCTGTTACCCTACAAGACGGAAGAGAAGTAATGCTTTACGAAATCATAGAAAGTATAATTGGCGAAGAGAATGAAGAAGAGAAAGTGAGTTTGTTTATTGATCCTTGCCTCATTGAAAGCTGTAGGAAAGCAAGTGCACTGCAGCTAGTTAAACTGGGTCTAGCCTGTTTGACCCAAGAACCAGAAAGCAGACCAAACATTGAAGAGGTAGTCTCCAATTTAATGAAAATACAGGCAAATGATATGCAACAAAGTATAGCACCCATTATCAGTAACAACCTAAGCCTGGAGAGGTGA 1920 0.4047 MKKNNFTMNHFVFNFIFFILNIFLSLKTKAQQNYSGNSIFTCENSDDTGPSPAFLYTCNGFNKSCMAFLSFRSKTPYNSVNAISNLTSSNPKELARINGATLLTVFPPGKEVIVPVNCSCLTNNYYQAETKYVLGQNPTYFTVANDTFQGLTTCDSLMRANPYGVLDLHPGMELQVLLRCACPTYHQKTNGTKYLLTYSVTWGDNISNIATRFNVTEGNLIDANGFSSQTQVLYPFTTVLIPFPSEPGSPTTIVANDPPIPQDCSLKKCKSKKKTLPIALTTSVLVLCAFLFVLVLFLLRKRSVGLSKRRARGEKKTEVFSEEIREEIAIIEHLSKVYRFEEIKEATENFSSKNRIEGSLFRGVFNNGKEVLAVKRMRGDVSKEVNLLKRINHFNLIKLQGYCENKACIYLVYEYMENGSLREWLSKNSSVEHQSWGRRIQIAVDIANGLQYLHNFTEPSYVHKDINSGNILLNKDLRAKIAKFALVEESESMVTSDCPTSHVVGSAGYLAPEYLEAGVVSTKMDVYAFGVVLLELITGKDSVTLQDGREVMLYEIIESIIGEENEEEKVSLFIDPCLIESCRKASALQLVKLGLACLTQEPESRPNIEEVVSNLMKIQANDMQQSIAPIISNNLSLER 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05733 639 Gene3D Phosphorylase Kinase; domain 1 310 415 - -
Vivi4g05733 639 ProSiteProfiles Protein kinase domain profile. 350 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g05733 639 ProSiteProfiles LysM domain profile. 196 241 IPR018392 -
Vivi4g05733 639 FunFam PTI1-like tyrosine-protein kinase 3 416 628 - -
Vivi4g05733 639 Gene3D LysM domain 195 242 IPR036779 -
Vivi4g05733 639 SUPERFAMILY Protein kinase-like (PK-like) 331 624 IPR011009 -
Vivi4g05733 639 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 10 622 - -
Vivi4g05733 639 Pfam Protein kinase domain 376 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g05733 639 Gene3D Transferase(Phosphotransferase) domain 1 416 634 - -
Vivi4g05733 639 SUPERFAMILY LysM domain 196 242 IPR036779 -
Vivi4g05733 639 Pfam LysM domain 198 242 IPR018392 -
Vivi4g05733 639 SMART LysM_2 197 242 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05733 Vivi-Chr4 193655031 193657149 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05733 8 620 Receptor kinase-like Gene Family AT2G23770 38.644 9.02e-123 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vivi4g05733 Pkinase 1.5e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05733 - - gmx:100806221 850.121