Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05707 ATGGCTTCTATTTCCTTTCATTATTCTCTCTTTCTCCTAATAATAACCATTTTCTCATCATCAAAACTAGCCAACGCAGCAAACAACACACAGAATTTCCACTACTTCTGTGATTTCAACAATAGAGGTAACTTCACAAACAACAGCACTTACCAAACAAACCTCAAAACACTTTTATCAACTCTAACTTCCAACACACAAATCAACTACGGTTTCTACAATTTCTCAAACGGCCAAAACACTAACAAAGTTAACGCAATTGCTCTCTGCAGAGGCGATGTTAAAAACCAAAACGACTGCCTCAGTTGCCTAAAAGCTTCAAGCAACAATCTCACACAGCTTTGTCCAAACCAGAAAGAAGCAATTGGTTGGTACGAAGATGAAAAATGCATGCTGCGTTATTCAGATCGATCCATATTTCGGTTATTGGAAACGGGACCTGCTTATTATGCAAACAACCTGGCTAACGCAACTGATTTGAGTGTGTTCAATGAAACTGTCCGCGACCTGCTGGATAATTTGACTCAGAGAGCTTCGTCGGGTGATTCTAGTTTGAAGTTTGCTGCTGATAGTGCACGCGGTCCTAATGATCAAACTATATATGGTCTTGTTCAGTGTACGCCTGATTTGTCTGAATCAGATTGTAGTTCTTGTTTGGTTCAGTCTGTTGCGCGTATACCTATTGATTGTTGTAAAGATAAGATTGGTGGAAGAGTCGTTAGGCCTAGCTGTAACATGAGATTTGAAACCAATTTTCCATTCTATGATCTTACAGCAACGCCGCCACCACCTCTTTCCACCACCAATAACACTTCCTCGCCTCCTCCACCAGGAAAAAGCAAAACTACCACAATCATTGCCATTGTAGTATCAGTTGTTGCTATTATGGTGCTCATTTTAATCTTCATCTATTTAAGAGTAAGGAAGCGAAGTAAAAAGTTTAGAATTCAAGAAGAAGAAGAAGATGATGATGAAATTGAAATTTCGGAGTCATTGCAATTCAAGTTAGATACAATAAGAGATGCAACAAATGACTTTTGTGATGAAAATAAACTTGGACAAGGTGGATTTGGAACTGTCTACAGAGGTACACTCCCCAATGGACAAGAGATTGGTGTCAAGAGGTTGTCAAAGGATTCTGGCCAAGGAGATTTAGAATTTAAGAATGAAGTTGTTTTAGTGGCTAAGCTTCAACACCGAAATTTAGTCAGACTACTCGGTTTCTGTATAGAAGGAAGAGAAAGACTGCTTGTATATGAATTTGTTCCCAATAAGAGTCTTGATTACTTCATTTTTGATGAAACCAAGAGAGCGTGTTTAAATTGGGAAAGGAGGTATAAAATCATTGCAGGTATTGCTCGAGGAATTCTTTACCTTCACGAGGATTCTCGTCTACGCATTATCCATCGTGATCTCAAAGCAAGCAATATTCTCTTAGACGGAGAGATGAATCCAAAGATAGCAGATTTTGGTATGGCTAGACTGTTTGCAGTGGACCAAACTCAAGAGAATACAAATAGAATCGTGGGAACCTATGGATATATGGCACCCGAGTATGCAATGCATGGACAGTTTTCAGTGAAGTCAGACGTATTCAGTTTTGGCGTATTGATTCTTGAGATTATAAGTGGCCACAAAAATAGTGGCGTTCGTCATGGGGATACTAATGAGTATCTTCTAAGCTTTGTATGGAGAAACTGGCGAGACGGGTCACCAACAAATATTATAGATCCCACAATAATCAATGATTCAGTAAATGAAGTATTGAGATGCATCCACATTGGGTTACTTTGTGTTCAAGAAAATGCTACTAGCAGACCAACTATGGCTTCTGTAGTCCTAATGCTTAATAGCCATTCTCTCAGTCTATCAAGACCTTCAGAACCTGCATTTTATGTAGGTAGTGGAGCTGTAGACTTTCAAGATATAATGATGCAATCATCCGAGCATAACTCAGGTCAGGAATCCATAAATAAGGTTTCGATTACAGAGCTATATCCTCGCTAG 2007 0.3911 MASISFHYSLFLLIITIFSSSKLANAANNTQNFHYFCDFNNRGNFTNNSTYQTNLKTLLSTLTSNTQINYGFYNFSNGQNTNKVNAIALCRGDVKNQNDCLSCLKASSNNLTQLCPNQKEAIGWYEDEKCMLRYSDRSIFRLLETGPAYYANNLANATDLSVFNETVRDLLDNLTQRASSGDSSLKFAADSARGPNDQTIYGLVQCTPDLSESDCSSCLVQSVARIPIDCCKDKIGGRVVRPSCNMRFETNFPFYDLTATPPPPLSTTNNTSSPPPPGKSKTTTIIAIVVSVVAIMVLILIFIYLRVRKRSKKFRIQEEEEDDDEIEISESLQFKLDTIRDATNDFCDENKLGQGGFGTVYRGTLPNGQEIGVKRLSKDSGQGDLEFKNEVVLVAKLQHRNLVRLLGFCIEGRERLLVYEFVPNKSLDYFIFDETKRACLNWERRYKIIAGIARGILYLHEDSRLRIIHRDLKASNILLDGEMNPKIADFGMARLFAVDQTQENTNRIVGTYGYMAPEYAMHGQFSVKSDVFSFGVLILEIISGHKNSGVRHGDTNEYLLSFVWRNWRDGSPTNIIDPTIINDSVNEVLRCIHIGLLCVQENATSRPTMASVVLMLNSHSLSLSRPSEPAFYVGSGAVDFQDIMMQSSEHNSGQESINKVSITELYPR 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05707 668 SUPERFAMILY Protein kinase-like (PK-like) 329 616 IPR011009 -
Vivi4g05707 668 CDD STKc_IRAK 352 617 - -
Vivi4g05707 668 Gene3D Phosphorylase Kinase; domain 1 307 421 - -
Vivi4g05707 668 ProSiteProfiles Gnk2-homologous domain profile. 145 253 IPR002902 -
Vivi4g05707 668 SMART serkin_6 346 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g05707 668 ProSiteProfiles Protein kinase domain profile. 346 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g05707 668 FunFam cysteine-rich receptor-like protein kinase 10 422 623 - -
Vivi4g05707 668 ProSiteProfiles Gnk2-homologous domain profile. 33 139 IPR002902 -
Vivi4g05707 668 MobiDBLite consensus disorder prediction 261 280 - -
Vivi4g05707 668 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 30 139 - -
Vivi4g05707 668 MobiDBLite consensus disorder prediction 259 280 - -
Vivi4g05707 668 Gene3D - 147 252 IPR038408 -
Vivi4g05707 668 Gene3D - 30 138 IPR038408 -
Vivi4g05707 668 FunFam Cysteine-rich receptor-like protein kinase 10 147 254 - -
Vivi4g05707 668 ProSitePatterns Serine/Threonine protein kinases active-site signature. 467 479 IPR008271 GO:0004672|GO:0006468
Vivi4g05707 668 FunFam Cysteine-rich receptor-like protein kinase 17 314 421 - -
Vivi4g05707 668 Gene3D Transferase(Phosphotransferase) domain 1 422 626 - -
Vivi4g05707 668 Pfam Protein tyrosine and serine/threonine kinase 350 614 IPR001245 GO:0004672|GO:0006468
Vivi4g05707 668 MobiDBLite consensus disorder prediction 649 668 - -
Vivi4g05707 668 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 37 667 - -
Vivi4g05707 668 CDD TM_EGFR-like 280 313 - -
Vivi4g05707 668 Pfam Salt stress response/antifungal 37 136 IPR002902 -
Vivi4g05707 668 Pfam Salt stress response/antifungal 155 250 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05707 Vivi-Chr4 193430845 193439551 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05707 40 668 Receptor kinase-like Gene Family AT4G38830 51.084 0.0 607
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi4g05707 PK_Tyr_Ser-Thr 7.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05707 - - var:108324787 827.009