Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05696 ATGGGAGGAAGAGAAGAAGAAGGATGCAGATCCTGGGAGGAAGACGTTTACTGGACCCATTTTCAATTCATCCATTTCACCCAATTTCTCCGCAATGATTTTGATCAACAACTTGCACTTCCCAAAACATTTTCAGACAATATAAAGAAGAAGTTGCCAGAAAGTGTGACCCTAAAAGGTCCTGGTGGAGCGCTGTGGAATATAGAGCTGACAACTAGAGACGGTACTTTGTACTTCACGAACGGTTGGCAACAATTTGTAAAAGAACACTCTTTGAAAGAAAATGATTTTCTTGTCTTTAAGTACAACGGTGAATCGTTGTTTGAGGTTTTAATCTTTGATGGCGAGAGTTTCTGTGAGAAGGCAGCTTGTTATTTTGTTCGAAAATGTCGGCATGCCGCTCCTACTGAACATGGGGGTGGATGTTCTAGCAAGAAAAGGGACTCAGATAATTCTGTTGAAGAAGTCAATACTCCTTCTAATGGTGTTGATGAAGGTGTTTCACCTGAGAAACCTTCGCATCTTGACAAAATCCGAGTGCCATTTGCCGTACCTATCGAAATTACTAACGGAAAGACTTCGAATGCTGGTGTTGAATCTGCCTCCGCTGAGCAATTCATGTCTGATGCAGTAGTCAATGATACTGAGCCAATAACTGTTCCCTCCCAAACAACTGGTAAACGGACAAGGAAGCCTGTTTATGCCGACACGTCTGTCCCGAGTAAGAGGAGAGGAAGACCACCAAAATCAGCTATTTCTCACGAGAGAACTCTTGAATGGGTGTCTGATGCTGAACTTTCTCCCAAGGTTTCTCCAAAGGCCTCTCCAAAGGTTAGATCAGCGACACAGGAACTATATACTTCAAATAGAAGGCCTGTCACACAAGATGAGATCGAAAACACTCTTCGGTTGGCCCAGGAAACATGTATTGAAGACACCTTGCTTGTAACTATGCGACCTTCGCATGTATACAAGAGATTCTTCGTGTCATTCCCTAATAAGTGGATACTAAACCATCTTTCTCCGTCATCTCAAGATGTGATATTACGGATGGGTACGGGTGAATGGGTTGGGAAATACTGCTTTCACAATATTCGTAACAATGGAGGACTTTCCGGTGGGTGGAAACATTTTGCGCTCGAAAATAACCTCGAAGAGTTTGATGTGTGTTTGTTTAAGCCCGCTGGTTATATGCAAAACACATTGATCTTAGAAATGACCATTTTTAGAGTTGTTGAGGAGATTACTCCTCTTACTGCGGTGAATTCTTCGGGAAAGAAGAGATCAATTAAGAAAACACCTTCCGGAGAACCACAACTAAAAAGGAGGGGAGTTATGATAACCCCAATCAAAGCTATCCAAACAGAACTTGACTCCCTTGAAGGTGCGTAA 1392 0.4253 MGGREEEGCRSWEEDVYWTHFQFIHFTQFLRNDFDQQLALPKTFSDNIKKKLPESVTLKGPGGALWNIELTTRDGTLYFTNGWQQFVKEHSLKENDFLVFKYNGESLFEVLIFDGESFCEKAACYFVRKCRHAAPTEHGGGCSSKKRDSDNSVEEVNTPSNGVDEGVSPEKPSHLDKIRVPFAVPIEITNGKTSNAGVESASAEQFMSDAVVNDTEPITVPSQTTGKRTRKPVYADTSVPSKRRGRPPKSAISHERTLEWVSDAELSPKVSPKASPKVRSATQELYTSNRRPVTQDEIENTLRLAQETCIEDTLLVTMRPSHVYKRFFVSFPNKWILNHLSPSSQDVILRMGTGEWVGKYCFHNIRNNGGLSGGWKHFALENNLEEFDVCLFKPAGYMQNTLILEMTIFRVVEEITPLTAVNSSGKKRSIKKTPSGEPQLKRRGVMITPIKAIQTELDSLEGA 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05696 463 MobiDBLite consensus disorder prediction 134 153 - -
Vivi4g05696 463 Pfam B3 DNA binding domain 35 114 IPR003340 GO:0003677
Vivi4g05696 463 Pfam B3 DNA binding domain 316 402 IPR003340 GO:0003677
Vivi4g05696 463 CDD B3_DNA 25 114 IPR003340 GO:0003677
Vivi4g05696 463 MobiDBLite consensus disorder prediction 209 254 - -
Vivi4g05696 463 SUPERFAMILY DNA-binding pseudobarrel domain 22 114 IPR015300 -
Vivi4g05696 463 Gene3D - 19 119 IPR015300 -
Vivi4g05696 463 CDD B3_DNA 317 410 IPR003340 GO:0003677
Vivi4g05696 463 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 31 415 IPR044837 -
Vivi4g05696 463 SMART B3_2 314 412 IPR003340 GO:0003677
Vivi4g05696 463 SMART B3_2 26 116 IPR003340 GO:0003677
Vivi4g05696 463 SUPERFAMILY DNA-binding pseudobarrel domain 315 401 IPR015300 -
Vivi4g05696 463 ProSiteProfiles B3 DNA-binding domain profile. 23 116 IPR003340 GO:0003677
Vivi4g05696 463 MobiDBLite consensus disorder prediction 215 231 - -
Vivi4g05696 463 Gene3D - 293 414 IPR015300 -
Vivi4g05696 463 ProSiteProfiles B3 DNA-binding domain profile. 314 412 IPR003340 GO:0003677
Vivi4g05696 463 MobiDBLite consensus disorder prediction 134 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05696 Vivi-Chr4 193281662 193285326 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05696 7 410 REM Transcription Factor Family AT4G33280 33.990 1.24e-65 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi4g05696 B3 7.5e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05696 - - tpra:123885991 715.687