Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05695 ATGGCCGGTGAAGGACCCAACGGCGGTGGAAGCAAGCCATGGCAGGAAGACATTTACTGGACCCATTTCCAGTTCATCCATTTCACCCAATTTCTGCACAACGATTTTCAACAACAGCTTGCACTTCCCAAAACATTTTCAGACAATTTAAAGAAGAAGTTGCCAGAAAATGTTGCCCTAAAAGGTCCTAGTGGAGTTGTGTGGAATATAGGGCTGGTAATTAGAGATGATTCTGTTTACTTCGTGAACGGTTGGGAACGATTTGTGAAGGATCACTCTTTGAAAGAGAATGATTTCCTTGTCTTTAAGTACAATGGTGAATCACTCTTTGAGGTTTTAGTCTTTGATGGAAACAGTTTCTGTGAGAAGGCAGCTTCTTATTTTGTTGGAAAATGCGGACCTGCTCAAACTGAACAAGGGGGTAGCAAGGCAAAGGAAAACAACAATTCTGTTGAAGAAGTCAATACTGCTTCTAATGGTGGCGTTGAATGTGGTTCATCGGAGAAATTTCGGCGTCTTAAGAAAGTAGGAACACCATTAGCTGTACCTTTTGAAACTGCCAACGGAAAGACTTCCAATGCTGGTGTAAGAATTGATTCCCCTGAGCTGTTTGCGGCGGATACAGTCACCAAGACCACACCTGTAGCAGTTCCCTTCCAATCAGCTGCAAAAAGGACCAAGAAGCCTGTTAATGAAGTTACGCCTGTCGTCCATACTAAGAAGCGAGGAAGACCACCAAAAGTAGATAATTCTTCGGAGACAATTCGTGATTTGGTGGCTTACAGCAAGGAACACTCAGATAGCAAGGGAAAAGATGTTGATGGCCATGATGAAATTCAAGGCGGAACCTGA 852 0.4343 MAGEGPNGGGSKPWQEDIYWTHFQFIHFTQFLHNDFQQQLALPKTFSDNLKKKLPENVALKGPSGVVWNIGLVIRDDSVYFVNGWERFVKDHSLKENDFLVFKYNGESLFEVLVFDGNSFCEKAASYFVGKCGPAQTEQGGSKAKENNNSVEEVNTASNGGVECGSSEKFRRLKKVGTPLAVPFETANGKTSNAGVRIDSPELFAADTVTKTTPVAVPFQSAAKRTKKPVNEVTPVVHTKKRGRPPKVDNSSETIRDLVAYSKEHSDSKGKDVDGHDEIQGGT 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05695 283 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 33 220 IPR044837 -
Vivi4g05695 283 SUPERFAMILY DNA-binding pseudobarrel domain 24 118 IPR015300 -
Vivi4g05695 283 Gene3D - 21 121 IPR015300 -
Vivi4g05695 283 MobiDBLite consensus disorder prediction 137 164 - -
Vivi4g05695 283 Pfam B3 DNA binding domain 32 116 IPR003340 GO:0003677
Vivi4g05695 283 CDD B3_DNA 27 116 IPR003340 GO:0003677
Vivi4g05695 283 MobiDBLite consensus disorder prediction 258 283 - -
Vivi4g05695 283 ProSiteProfiles B3 DNA-binding domain profile. 25 118 IPR003340 GO:0003677
Vivi4g05695 283 MobiDBLite consensus disorder prediction 222 283 - -
Vivi4g05695 283 SMART B3_2 25 118 IPR003340 GO:0003677
Vivi4g05695 283 MobiDBLite consensus disorder prediction 140 163 - -
Vivi4g05695 283 MobiDBLite consensus disorder prediction 234 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05695 Vivi-Chr4 193267055 193277761 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05695 14 140 REM Transcription Factor Family AT4G33280 55.469 1.15e-45 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi4g05695 B3 2.1e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05695 - - vvo:131596554 563.533