Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05693 ATGGCCGGTGAAGGACCCAACGGCGGTGGAAGCAAGCCATGGCAGGAAGACATTTACTGGACCCATTTCCAGTTCATCCATTTCACCCAATTTCTGCACAACGATTTTCAACAACAGCTTGCACTTCCCAAAACATTTTCAGACAATTTAAAGAAGAAGTTGCCAGAAAATGTTGCCCTAAAAGGTCCTAGTGGAGTTGTGTGGAATATAGGGCTGGTAATTAGAGATGATTCTGTTTACTTCGTGAACGGTTGGGAACGATTTGTGAAGGATCACTCTTTGAAAGAGAATGATTTCCTTGTCTTTAAGTACAATGGTGAATCACTCTTTGAGGTTTTAGTCTTTGATGGAAACAGTTTCTGTGAGAAGGCAGCTTCTTATTTTGTTGGAAAATGCGGACCTGCTCAAACTGAACAAGGGGGTAGCAAGGCAAAGGAAAACAACAATTCTGTTGAAGAAGTCAATACTGCTTCTAATGGTGGCGTTGAATGTGGTTCATCGGAGAAATTTCGGCGTCTTAAGAAAGTAGGAACACCATTAGCTGTACCTTTTGAAACTGCCAACGGAAAGACTTCCAATGCTGGTGTAAGAATTGATTCCCCTGAGCTGTTTGCGGCGGATACAGTCACCAAGACCACACCTGTAGCAGTTCCCTTCCAATCAGCTGCAAAAAGGACCAAGAAGCCTGTTAATGAAGTTACGCCTGTCGTCCATACTAAGAAGCGAGGAAGACCACCAAAAGTAGATAATTCTTCGGAGACAATTCGTGATTTGGTGGCTTACAGCAAGGAACACTCAGACAACATAAAGAGAAGATTCCCACGCCCCTTCCCGACGCTGATCTGCCACTTGAACCTGTACTTGTTGAATCACGACATTCTGTTAGAACATTTCGAGCACCAGATAGATATTCACCAGACAGATAGCAAGGGAAAAGATGTTGATGGCCATGATGAAATTCAAGGCGGAACCTGA 975 0.4369 MAGEGPNGGGSKPWQEDIYWTHFQFIHFTQFLHNDFQQQLALPKTFSDNLKKKLPENVALKGPSGVVWNIGLVIRDDSVYFVNGWERFVKDHSLKENDFLVFKYNGESLFEVLVFDGNSFCEKAASYFVGKCGPAQTEQGGSKAKENNNSVEEVNTASNGGVECGSSEKFRRLKKVGTPLAVPFETANGKTSNAGVRIDSPELFAADTVTKTTPVAVPFQSAAKRTKKPVNEVTPVVHTKKRGRPPKVDNSSETIRDLVAYSKEHSDNIKRRFPRPFPTLICHLNLYLLNHDILLEHFEHQIDIHQTDSKGKDVDGHDEIQGGT 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05693 324 Pfam B3 DNA binding domain 32 116 IPR003340 GO:0003677
Vivi4g05693 324 CDD B3_DNA 27 116 IPR003340 GO:0003677
Vivi4g05693 324 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 33 235 IPR044837 -
Vivi4g05693 324 ProSiteProfiles B3 DNA-binding domain profile. 25 118 IPR003340 GO:0003677
Vivi4g05693 324 Gene3D - 21 121 IPR015300 -
Vivi4g05693 324 SMART B3_2 25 118 IPR003340 GO:0003677
Vivi4g05693 324 MobiDBLite consensus disorder prediction 137 163 - -
Vivi4g05693 324 MobiDBLite consensus disorder prediction 140 163 - -
Vivi4g05693 324 SUPERFAMILY DNA-binding pseudobarrel domain 24 118 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05693 Vivi-Chr4 193267051 193277761 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05693 14 140 REM Transcription Factor Family AT4G33280 55.469 9.38e-45 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi4g05693 B3 2.7e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05693 - - vvo:131596554 665.225