Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05691 ATGGCTTGTAAGTGTAAGGGGAGCTTGAATGTGAGAAAACCTCAGTTCTATGAGGTGTATTCGTCTTCTTCTAGCTTTGAAACTCTGAAAATTCCAAATGGTTTTGTCTGTCAAATGGAAGGCAGGACGGGTGGATTAGTTTCATTAACTGGTCCTAGTGGAAATACTTGGCAAGTTCGATTAGTTGAGCAGGGAAATTATCTCTTCTTCCATCAGGGATGGTCAACATTTACGGAAGATCATCATTTAGAATACGGTGACCTTTTGGTTTTCAGATACGAGGGTGACTTGCATTTCACCGTGCAAGTGTTTGGTAAGAATGCGTGCGAGAAAGAAGCAGCATTTCATTCTCAGTGCAATCTAAATTCATTCAACTTAGATAATATTGAAGGACTAAAAAGGGATGCCGAGGAGATTTCTTCTTTGGATGTTGTTGGAGGTGTTCAGAAGAAAATGAGGCGTGGCACAGTTGAGAACCAGGAGCTTGAGCTGACTATTGTTGGTAGAGAACCACCCCAGTGTGAGGTAATTAAACCACTTCGAATGATCAGAGACACAGAAGAAACCTACGGAGAATGTTCTGCTAGTGCTGTTCCTTTTCACGCTAAAAATAGTAATGAAGATGAAGCCATTCTCAGCGGAGCTTCGTTGTCAAAGCTATCAGCACATGATGAGAAAAAGATAGCCCAGTCATTTACCTCCTCTTTTCCATATTTTGTTAAAATAATTAAAACCTTCAATGTCAGTGGTTCATATACTCTGAATATACCATATCAATTTTCGATGGCACATCTTCCAAACTGCAAGATAAAGATTATTCTTCATAATTTGAAGGGAGAACACTGGACTGTTAATTCTGTTCCAACAACTAGAGTGCATACAAGTCACACTATGTGTGGAGGATGGATGGCTTTTGTTCGAGGTAATAGTATAAAGGTTGGAGATGTCTGCATTTTCGAACTTATACGTGAGTGTGAATTACGTGTTCGCATCGCTGAGGTTGGAAAAGATGGGCTAGACTGCCAAGTTGGAAAACTAGCTTTTAGTATGCTTAGGGCAAGACATGATGTCGCTTGCCGAAAGACTGCCAACTATATGTCAAAAAACCCTAAAGTCAGCACAAAGTCTAGAAACAAAGTTGATCTATCAGATAAAAGGTTGTCAAAGATTGGTCAAGAAGTTGTTTTATCCAGTAGAGCTTCAAATACTTCGAAGAAGATGGGGGTTGGCCCGAAGTCGAAAGCTGCCAAGAAAAAGTTGGCTGTACCGCGGAAACATAGTGTTGAAGATGAACTAAGCTCCCAGGCTAAAGCTGGTTTGAGAATGTTGTTTGCACTTGACGAACAAAGAGTGGCTGAAGCATTTACTTCCGACTTTCCTAATTTTGTGAAAATCATGAAGATGTTCAATGTTAGTGGATCATACACTTTGAAAATTCCATATCAATTCTCTGCTGCACATCTTCCTGCCGATAAAACAGAAGTTACCCTTCGCAATTCAAGAGGCGAATGTTGGACTGTGAACTCCGTTCCAGATGCTAATGGGAGAACAATTCACACCTTTTGTGGAGGATGGATGGCGTTTGTTCGTGATAATGACATAAATTTTGGCGACACATGCATCTTTGAGTTGGTTTCTCATTATGTGATGCAGGTTTATATATCTGGGGTTGGAAAGGAAGGTCTTGACCATCAAAATGGGCATGTGAAACTTATCACTAACTAG 1725 0.4041 MACKCKGSLNVRKPQFYEVYSSSSSFETLKIPNGFVCQMEGRTGGLVSLTGPSGNTWQVRLVEQGNYLFFHQGWSTFTEDHHLEYGDLLVFRYEGDLHFTVQVFGKNACEKEAAFHSQCNLNSFNLDNIEGLKRDAEEISSLDVVGGVQKKMRRGTVENQELELTIVGREPPQCEVIKPLRMIRDTEETYGECSASAVPFHAKNSNEDEAILSGASLSKLSAHDEKKIAQSFTSSFPYFVKIIKTFNVSGSYTLNIPYQFSMAHLPNCKIKIILHNLKGEHWTVNSVPTTRVHTSHTMCGGWMAFVRGNSIKVGDVCIFELIRECELRVRIAEVGKDGLDCQVGKLAFSMLRARHDVACRKTANYMSKNPKVSTKSRNKVDLSDKRLSKIGQEVVLSSRASNTSKKMGVGPKSKAAKKKLAVPRKHSVEDELSSQAKAGLRMLFALDEQRVAEAFTSDFPNFVKIMKMFNVSGSYTLKIPYQFSAAHLPADKTEVTLRNSRGECWTVNSVPDANGRTIHTFCGGWMAFVRDNDINFGDTCIFELVSHYVMQVYISGVGKEGLDHQNGHVKLITN 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05691 574 Gene3D - 220 335 IPR015300 -
Vivi4g05691 574 Gene3D - 447 557 IPR015300 -
Vivi4g05691 574 Gene3D - 8 109 IPR015300 -
Vivi4g05691 574 ProSiteProfiles B3 DNA-binding domain profile. 14 107 IPR003340 GO:0003677
Vivi4g05691 574 ProSiteProfiles B3 DNA-binding domain profile. 239 335 IPR003340 GO:0003677
Vivi4g05691 574 ProSiteProfiles B3 DNA-binding domain profile. 462 558 IPR003340 GO:0003677
Vivi4g05691 574 Pfam B3 DNA binding domain 462 547 IPR003340 GO:0003677
Vivi4g05691 574 Pfam B3 DNA binding domain 239 331 IPR003340 GO:0003677
Vivi4g05691 574 Pfam B3 DNA binding domain 21 106 IPR003340 GO:0003677
Vivi4g05691 574 SUPERFAMILY DNA-binding pseudobarrel domain 232 332 IPR015300 -
Vivi4g05691 574 SMART B3_2 462 558 IPR003340 GO:0003677
Vivi4g05691 574 SMART B3_2 16 107 IPR003340 GO:0003677
Vivi4g05691 574 SMART B3_2 239 335 IPR003340 GO:0003677
Vivi4g05691 574 CDD B3_DNA 460 553 IPR003340 GO:0003677
Vivi4g05691 574 CDD B3_DNA 237 331 IPR003340 GO:0003677
Vivi4g05691 574 CDD B3_DNA 21 104 IPR003340 GO:0003677
Vivi4g05691 574 SUPERFAMILY DNA-binding pseudobarrel domain 455 556 IPR015300 -
Vivi4g05691 574 MobiDBLite consensus disorder prediction 399 428 - -
Vivi4g05691 574 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 27 337 IPR044837 -
Vivi4g05691 574 SUPERFAMILY DNA-binding pseudobarrel domain 10 109 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05691 Vivi-Chr4 193219776 193223817 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05691 13 331 B3 DNA Binding Superfamily AT3G18990 24.189 2.05e-20 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi4g05691 B3 5.9e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05691 - - gmx:100814386 838.18