Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05689 ATGTCGAGTAGTAGGGATACTCATTGGTGTTATAATTGCATGAAGTCGGTTCGATTGGGACGACGACGTGCGGTTTGCTCTGGTTGTGACGGGGGATTTGTTCAAGATCTCGATGATATGGTTCATGGTAGCCCTCCAGACTTTCATGGAGTGGACAGCGATGAAGAATTTGGACAAAGGTATGGACTCATGGCTGAAAATATCAGGGCACGATCGGATTCAGTTCCCGAAAACGGTCCAAGGTTTACTACTCCTTTGTTAATCTATGGTGGCCAAATTCCATCCAGGTTTTCTAGACAAGGCGGCATTGAAGCTCTCTTAAACGGGACTCCAGGAGTTGGTGTGACAAGAGATAACTCGGGTGACTATTTTATAGGTCCTGGAGTTACAGAACTGTTTGAACAGCTTTCGGCTAATGACCAGCGAGGTCCCCCTCCTGCATCGCGGTCTTCCATAGCTGCAATACCTACTGTTAAGATTGCGTCAAAGCATCTTCAGTCGGATCCATCATGTCCGGTATGCCAAGATGACTTTGAGCTGGGGTCCGAAGCAAAACAAATGCCGTGTAAGCATATGTTTCATTCAGATTGTATTGTCCCGTGGTTGGTTCAGCATAATACCTGCCCTGTTTGCCGTCAAGAATTGCCACCACAAGGATCAAGCGGTCACCGTAGCTCAAGTAGAAATGGTGGAAGAAGGAGAAATCCTTTTTCCTTTTTGTGGCCTTTTGGCTCTTCTAATTCTAGAAGTAACAATAGAGCAATGGAATGA 771 0.4604 MSSSRDTHWCYNCMKSVRLGRRRAVCSGCDGGFVQDLDDMVHGSPPDFHGVDSDEEFGQRYGLMAENIRARSDSVPENGPRFTTPLLIYGGQIPSRFSRQGGIEALLNGTPGVGVTRDNSGDYFIGPGVTELFEQLSANDQRGPPPASRSSIAAIPTVKIASKHLQSDPSCPVCQDDFELGSEAKQMPCKHMFHSDCIVPWLVQHNTCPVCRQELPPQGSSGHRSSSRNGGRRRNPFSFLWPFGSSNSRSNNRAME 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05689 256 Pfam Ring finger domain 170 212 IPR001841 -
Vivi4g05689 256 MobiDBLite consensus disorder prediction 214 256 - -
Vivi4g05689 256 MobiDBLite consensus disorder prediction 240 256 - -
Vivi4g05689 256 ProSiteProfiles Zinc finger RING-type profile. 171 212 IPR001841 -
Vivi4g05689 256 SMART ring_2 171 211 IPR001841 -
Vivi4g05689 256 FunFam E3 ubiquitin-protein ligase RING1-like 134 218 - -
Vivi4g05689 256 SUPERFAMILY RING/U-box 152 218 - -
Vivi4g05689 256 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 97 216 - -
Vivi4g05689 256 CDD RING-H2_RNF126-like 171 212 - -
Vivi4g05689 256 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 218 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05689 Vivi-Chr4 193207347 193209194 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05689 119 216 C3H Transcription Factor Family AT5G01980 48.000 2.10e-26 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05689 K11982 - jre:109008136 349.747