Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05688 ATGTCGAGTAGTAGGGATACTCATTGGTGTTATAATTGCATGAAGTCGGTTCGATTGGGACGACGACGTGCGGTTTGCTCTGGTTGTGACGGGGGATTTGTTCAAGATCTCGATGATATGGTTCATGGTAGCCCTCCAGACTTTCATGGAGTGGACAGCGATGAAGAATTTGGACAAAGGTTTTCTAGACAAGGCGGCATTGAAGCTCTCTTAAACGGGACTCCAGGAGTTGGTGTGACAAGAGATAACTCGGGTGACTATTTTATAGGTCCTGGAGTTACAGAACTGTTTGAACAGCTTTCGGCTAATGACCAGCGAGGTCCCCCTCCTGCATCGCGGTCTTCCATAGCTGCAATACCTACTGTTAAGATTGCGTCAAAGCATCTTCAGTCGGATCCATCATGTCCGGTATGCCAAGATGACTTTGAGCTGGGGTCCGAAGCAAAACAAATGCCGTGTAAGCATATGTTTCATTCAGATTGTATTGTCCCGTGGTTGGTTCAGCATAATACCTGCCCTGTTTGCCGTCAAGAATTGCCACCACAAGGATCAAGCGGTCACCGTAGCTCAAGTAGAAATGGTGGAAGAAGGAGAAATCCTTTTTCCTTTTTGTGGCCTTTTGGCTCTTCTAATTCTAGAAGTAACAATAGAGCAATGGAATGA 663 0.4615 MSSSRDTHWCYNCMKSVRLGRRRAVCSGCDGGFVQDLDDMVHGSPPDFHGVDSDEEFGQRFSRQGGIEALLNGTPGVGVTRDNSGDYFIGPGVTELFEQLSANDQRGPPPASRSSIAAIPTVKIASKHLQSDPSCPVCQDDFELGSEAKQMPCKHMFHSDCIVPWLVQHNTCPVCRQELPPQGSSGHRSSSRNGGRRRNPFSFLWPFGSSNSRSNNRAME 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05688 220 SMART ring_2 135 175 IPR001841 -
Vivi4g05688 220 ProSiteProfiles Zinc finger RING-type profile. 135 176 IPR001841 -
Vivi4g05688 220 MobiDBLite consensus disorder prediction 204 220 - -
Vivi4g05688 220 SUPERFAMILY RING/U-box 116 182 - -
Vivi4g05688 220 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 67 180 - -
Vivi4g05688 220 Pfam Ring finger domain 134 176 IPR001841 -
Vivi4g05688 220 MobiDBLite consensus disorder prediction 178 220 - -
Vivi4g05688 220 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 182 IPR013083 -
Vivi4g05688 220 FunFam E3 ubiquitin-protein ligase RING1-like 98 182 - -
Vivi4g05688 220 CDD RING-H2_RNF126-like 135 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05688 Vivi-Chr4 193207335 193209194 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05688 83 180 C3H Transcription Factor Family AT5G01980 48.000 9.29e-27 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05688 K11982 - jre:109008136 294.278
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05688 4 193207335 193209194 Vivi4g05688 4 193207335 193209194 ECH