Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05685 ATGCAAACTCTATTTTCATCTTCCATAGAACCTGACCTTTCTTTAAACATTAGTCCACCTTCTATTTCTGATTCACTAGTCCAAAAAATGGAAAACTATAACAAAGGAATAACAAAAGCACTTTATCATCATCATCATAATGATAATAATATATGTTCAATATCAACTACTTCTGATTCTGCTAGTAGTGAAAGTGAGTTAAGCCATGAAAATCCCTTCATCCATCAATATCATCATGAGCCAACATTGAGATTAGGTTTTGGAAACTCAGATTTGATGAATCCACATCATCATAATCATCATCTTCACCATCATCAAGCACACGGCGTCTCGAGAAACTTCATCCAACCTCACATCTACGGCCGTGATTTCAAGCGTAATACACGAACCGGTGTCAAAAGAAGTGTTAGAGCTCCGAGAATGAGATGGACTACAACTCTTCATTCTCATTTTGTTCACGCTGTTCAACTTCTTGGCGGTCATGAAAGAGCAACACCAAAATCGGTGTTAGAGTTGATGAATGTGAAGGATCTAACCCTAGCACATGTCAAGAGTCACTTACAGATGTATAGAACAGTGAAAACCACTGACAAATCAGGAGCAGGTCATGGGATGCTACAGACACAAGGGATTATTAATAATGTTCCTTTGCATGGATCAGCTTGTGAGAGAACAATTTTACCACAACAAAGGACATCATGGCAAGCATCAATAGAGACAAATACAAACAATACTGAAGAAAAATCTGAAATTGGTTTGACGTATTCACATTTCAAGGAAAATGATACCATGGTGAAATGTTCAGACTCTATGATTGACTTAGAATTCACACTTGGGAGACCAAATTGGGAAAAAGAAAATGGTGAATCATCAAGAGAGTTACCTCTTCTTAAGTGTTAA 900 0.3711 MQTLFSSSIEPDLSLNISPPSISDSLVQKMENYNKGITKALYHHHHNDNNICSISTTSDSASSESELSHENPFIHQYHHEPTLRLGFGNSDLMNPHHHNHHLHHHQAHGVSRNFIQPHIYGRDFKRNTRTGVKRSVRAPRMRWTTTLHSHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKTTDKSGAGHGMLQTQGIINNVPLHGSACERTILPQQRTSWQASIETNTNNTEEKSEIGLTYSHFKENDTMVKCSDSMIDLEFTLGRPNWEKENGESSRELPLLKC 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05685 299 FunFam Myb family transcription factor 137 195 - -
Vivi4g05685 299 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 11 286 IPR044847 GO:0000976|GO:0006355|GO:0010158
Vivi4g05685 299 SUPERFAMILY Homeodomain-like 136 192 IPR009057 -
Vivi4g05685 299 Pfam Myb-like DNA-binding domain 140 191 IPR001005 -
Vivi4g05685 299 NCBIfam myb-like DNA-binding domain, SHAQKYF class 139 192 IPR006447 GO:0003677
Vivi4g05685 299 Gene3D - 138 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05685 Vivi-Chr4 193136615 193140321 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05685 3 210 G2-like Transcription Factor Family AT5G42630 54.762 1.25e-52 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vivi4g05685 Myb_DNA-binding 1.5e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05685 - - gmx:100778242 302.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05685 4 193136615 193140321 Vivi4g05685 4 193136615 193140321 ECH
Vivi4g05698 4 193328552 193332270 Vivi4g05685 4 193136615 193140321 PCT