Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05684 ATGCGAAATCAATATTCACACACACGATCCAAACCCAAACCTGAAAACTCAATGCTAAGAGGCGAAATCGTCGGTTCCAAAAGCGCGAGGCACACCGCCACCACCGCCACCGTATCTAACAAAGTTCTCGTGGCGGTTAAAGCGGACAAGGTGATCTCCAACACCGCGTTAGCATGGGCACTCACTCACATCGTTCATTCCAGTGACTCTATCACACTTCTCGCCGTTTATTCTACCGAAAAAACCGGTAGAAGATTCTGGAATTTCTCGAGACTTGCCGGAGATTGTTCGAATGGACGCGCGGGAAAGTCGCCGGAGCAGATTTCTGATATCTCTGAGTCTTGTGCTCAGATGGTTTTTCAGTTGCACAATCACATTGAGGTTAGGGTGAAGATTAAGGTTGTCACGGGATCTCCCAGTGGTGCTGTGGCGGCTGAAGCTAGATGGAGTGGTTCCCATTGGGTCATACTGGACAAGAAACTAAAGCAAGAGGTAAAACATTGCATGGATGAACTTAACTGTAGCATTGTGGTGATGAATGGATCACAGCCTAAAGTCCTCAGACTTAATTTAGGAGGACCCTCCGATGAACTCCAAACACCATTTTTCTCTACTTCCTCTTCACCAGGTATAGAAATCAAAAAGCTAAATGGACGCAGATTGAAGCATTCCACCCCAGTGGGTAGCCCTGAAGTAGCAGGCTCATCTGTTATAACCAATACTGGATTAGATTCAGTGTCAAGCTCAGACTCAATGACTTCTCCGTTTCTGGTCTATAAAGAAAACCCACTGTATAATGGCCAGGGACCTCGCAAAAGAACAAACAAACCAATCAACAAGCCAAAAGATTTCAACTTCCAGCCACCATCATACTTTAATTTGGAAAGGGATAGCCCACCCCCTTCAAGGAAACTCCTAACATCATCTGTGGCTAGTGATAACAACACTGAAATTTGGATCTCTCAGAACCACATTAATAACGATAAGCTTCAAAGAGCTGAAAACAGAATGATTCAAAGAACTAAATCTCCAAATTCTAAAACTTTACTTGAGACTTTTTTACACTCTGATCAAGAGAAGAGAACAGATGAACTTGAGTTTAACAAAACTCAAAGTGTAAGTTATGACACCAGCTCAAGCATCAGAGATAGCCCTATTCCTTTGGGTAGAAATTCCTCTATACCTCCTCCCTTGTGCTCACTGTGTCAGAATATAGCACCTGTATTTGGAAACCCTCCTAGACGGTTTTCTTACAGAGAGATAGAAGAAGCTACAGACATGTTCTCAGATTTAAATTTTTTGGCTGAAGGTGGATTTGGTGTGGTTCACAAAGGAATACTGAAAGATGGCCAGGTTGTCGCAGTCAAACAAATTAAATTTAGTGGCTCTCAAGCAGATCTTGATTTCAGCAGGGAAGTTCGGGTTTTGAGTTGTGCCCAACACAGGAATGTTGTATTACTGATAGGATTTTGCACAGAAATCAATGCGAGGATATTAGTCTATGAGTACATATGTAATGGATCCTTAGACCTCTGCTTACATGGCAACAAGAGTATACCTTTGGACTGGAACTCGCGCTTAAAGATCGCAATCGGAGTTGCACGAGGCTTGCGCTATCTCCATGAAGATTGTAGAGTTGGTTGCATTGTGCACAGAGACATTCGCCCTAAAAATATTCTCTTAACGCATGACTTTGAACCCCTGGTGGCTGATTTTGGGCTTGCTAGATGGCAATCAGAATGGAACATAAATACAGAAGATCGTGTTATGGGAACTTCAGGGTACATTGCTCCGGAGTATCTTGATGCTGGAATTCTTACATGTAAAGTAGATGTATATGCATTTGGAATTGTTTTATTAGAGTTAATAACTGGTCAAAGAATTCGTGAGTTGGAACAATTCAACGAACACCCGTATCTTTCTGAATTGTTTCACCCCCTACACATGTTGGACCCCAATCATATCTTACAAAATGTTGGATCTCTCAACCCATGGTTGGATTCTGACGGGTCACTAGAATTTAATCTTCAATTTCAAGCCATGGCACGAGCTGTGTCACTTTGTCTACGTCTGGATCCTGATTCCAGACCCGCAATATCAAAGATCCTCAGAGTACTTGAAGGGGGCAATGCAGTTAGTTCTTTGGGTTTAGACATCAATTCAGTTGGTAGCATAAGTGGTCATTTAAGTGGTTTGAGTTCTCATACTCCTCCTAAAGGTAAAATAAGCCATTCTCGTAAGTTATCACATTGA 2253 0.4243 MRNQYSHTRSKPKPENSMLRGEIVGSKSARHTATTATVSNKVLVAVKADKVISNTALAWALTHIVHSSDSITLLAVYSTEKTGRRFWNFSRLAGDCSNGRAGKSPEQISDISESCAQMVFQLHNHIEVRVKIKVVTGSPSGAVAAEARWSGSHWVILDKKLKQEVKHCMDELNCSIVVMNGSQPKVLRLNLGGPSDELQTPFFSTSSSPGIEIKKLNGRRLKHSTPVGSPEVAGSSVITNTGLDSVSSSDSMTSPFLVYKENPLYNGQGPRKRTNKPINKPKDFNFQPPSYFNLERDSPPPSRKLLTSSVASDNNTEIWISQNHINNDKLQRAENRMIQRTKSPNSKTLLETFLHSDQEKRTDELEFNKTQSVSYDTSSSIRDSPIPLGRNSSIPPPLCSLCQNIAPVFGNPPRRFSYREIEEATDMFSDLNFLAEGGFGVVHKGILKDGQVVAVKQIKFSGSQADLDFSREVRVLSCAQHRNVVLLIGFCTEINARILVYEYICNGSLDLCLHGNKSIPLDWNSRLKIAIGVARGLRYLHEDCRVGCIVHRDIRPKNILLTHDFEPLVADFGLARWQSEWNINTEDRVMGTSGYIAPEYLDAGILTCKVDVYAFGIVLLELITGQRIRELEQFNEHPYLSELFHPLHMLDPNHILQNVGSLNPWLDSDGSLEFNLQFQAMARAVSLCLRLDPDSRPAISKILRVLEGGNAVSSLGLDINSVGSISGHLSGLSSHTPPKGKISHSRKLSH 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05684 750 FunFam Os07g0541700 protein 504 592 - -
Vivi4g05684 750 MobiDBLite consensus disorder prediction 261 307 - -
Vivi4g05684 750 Gene3D Transferase(Phosphotransferase) domain 1 504 715 - -
Vivi4g05684 750 Gene3D HUPs 24 192 IPR014729 -
Vivi4g05684 750 ProSiteProfiles Protein kinase domain profile. 428 715 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g05684 750 MobiDBLite consensus disorder prediction 730 750 - -
Vivi4g05684 750 SUPERFAMILY Protein kinase-like (PK-like) 408 706 IPR011009 -
Vivi4g05684 750 Gene3D Phosphorylase Kinase; domain 1 404 503 - -
Vivi4g05684 750 ProSitePatterns Tyrosine protein kinases specific active-site signature. 549 561 IPR008266 GO:0004672|GO:0006468
Vivi4g05684 750 PANTHER OS01G0750732 PROTEIN 177 710 - -
Vivi4g05684 750 Pfam Protein kinase domain 431 703 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g05684 750 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 400 503 - -
Vivi4g05684 750 SMART tyrkin_6 428 706 IPR020635 GO:0004713|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05684 Vivi-Chr4 193094947 193100644 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05684 409 633 Trihelix Transcription Factor Family AT1G26150 51.111 1.29e-68 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Vivi4g05684 Pkinase 1.8e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05684 - - gmx:100813141 1130.55