Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05682 ATGGTTATGCCTATTCCTTCCTTACTTTTCTCTCTCCAAATCCTCCTAATCATAACTTTCACATATCAAACCAAAGCTGTATACGACGAAATAAACAATTACCACTACTTTTGTGATCAAAGCAACAACAAAGCTAACTACACAGCCAATAGCACCTATCACAAGAACCTCAACACAGTTTTAACCACTCTCACTTCCAACACAGATATCAACTACGGTTTCTACAATTTTTCATTCGGCGAAAACAACGATAAAGTCTATTCAATTGGACTCTGTCGAGGGGATCTTTTGACGAATGACTGTCGCAGTTGCCTCAGCGGCTCAAGAGACAATCTCACAAGCGTTTGTCCAAATCAAAGAGAAGCAATTTTTTGGTCTCAAAACGAAAGATGTATGTTGCGTTACTCCGACCGATTAATATTTGGTATCATGGAAGATGTTCCTACGTTTCATTCAAATAACGAAAATGATTCAGCTGATGTTAATTTGTCTAATGAAGTTGTTACAACTTTGTTGAATAATTTAACAAGTAAAGCTGTGAAAGGTGATTCTAGGTTGAAATATGCTGCTGGAAGTTTACCTGGTCCTACGGTCGAGATTATATATGGTTTGGTTCAGTGTACACCTGATTTGTCTGAAAAAAAGTGCAATTCATGTTTGGTTGAGAGTCTTCAACAAATTCCAAGTTGTTGTAAGGGTAAGATTGGTGGAAGAGTTGTTAGGCCTAGTTGTAATATGAGATTTGAAACATCTTATGAATTTTATGATACTAGTCCTACAGCATCATCATCATCGCCGCCGCCACCGTCAGCACTGTCTCCTCCACCCAACACCACAGGAAAAAGTAATAAGAGTAGTACAATTGGCATTGCTGTGGCGGTCCCAGTTGCTATTGTTGCTTTGGTCTTCATTTTTGTATGCATCTATTTTAAAAGAAGGAAGTCAAAGAAAAAGTTTGAAGAAATTCAAGAAGAAGATCAAGACGACAAAATTGAAATATTTGAGTCACTGCAATTCAACTTCAACACCATATGTAATGCTACAAATGACTTCATTGTTTCTAATAAACTCGGAGAAGGAGGATTTGGGGTTGTTTACAAGGGTCAGCTTTCCAATGGACAAGAGATAGCTGTCAAAAGGTTATCAAGAGATTCTGGACAGGGTGATTTGGAGTTTAAAAATGAGGTGCTTTTAGTGGCTAGACTTCAACACCGTAATTTAGTTAGACTACTCGGCTTTTGTCTAGAAGGAGTGGAGAGATTACTTGTATATGAGTTTGTTCATAACAAAAGTCTCGATTACTTCATTTTTGATCAAGCTAAGAGAGAAGAATTGTATTGGGGAATGCGTTACAAAATCATCTTAGGTATTGCTCGAGGAATTCTTTATCTCCATGAAGATTCTCGACTACGTATTATTCACCGTGATCTCAAAGCAAGTAACATTCTCTTAGATGAAGATATGAATCCTAAGATAGCTGATTTTGGCATGGCAAGACTTTTTGGTGTAGACCAAACTCAAGAAAACACAAGAAGAATTGTGGGAACCTATGGATATATGGCACCTGAATATGCAATGCATGGAGAATTTTCAGTGAAGTCGGATGTCTTCAGTTTTGGTATATTGATTCTTGAAATTGTAAGCGGTATGAAAAATAGTGGTGTTCGTGATGGGGAAAGTATAGAGTACCTCTCAAGCTTTGCATGGAGAAATTGGAGGGACGGGACGATATCAAATACTATAGATCCCACATTAAATAATGATTCACAAAATGAAATAATGAGATGCATCCATATTGGATTACTTTGTGTTCAAGAGAATGTAGCAAGCAGACCAACAATGAATTCTGTTGTAGTAATGCTAAACAGTCCTTCTGTCACTCTCCCTATTCCTTCAGAACCTGCATTTCATATGGATGTTCAAAACTTTCAAGATATTAGTTCAGCTCAAGAATCAATCAATGAAATGTCAAATACAGAGTTATATCCCCGTTAG 1995 0.3724 MVMPIPSLLFSLQILLIITFTYQTKAVYDEINNYHYFCDQSNNKANYTANSTYHKNLNTVLTTLTSNTDINYGFYNFSFGENNDKVYSIGLCRGDLLTNDCRSCLSGSRDNLTSVCPNQREAIFWSQNERCMLRYSDRLIFGIMEDVPTFHSNNENDSADVNLSNEVVTTLLNNLTSKAVKGDSRLKYAAGSLPGPTVEIIYGLVQCTPDLSEKKCNSCLVESLQQIPSCCKGKIGGRVVRPSCNMRFETSYEFYDTSPTASSSSPPPPSALSPPPNTTGKSNKSSTIGIAVAVPVAIVALVFIFVCIYFKRRKSKKKFEEIQEEDQDDKIEIFESLQFNFNTICNATNDFIVSNKLGEGGFGVVYKGQLSNGQEIAVKRLSRDSGQGDLEFKNEVLLVARLQHRNLVRLLGFCLEGVERLLVYEFVHNKSLDYFIFDQAKREELYWGMRYKIILGIARGILYLHEDSRLRIIHRDLKASNILLDEDMNPKIADFGMARLFGVDQTQENTRRIVGTYGYMAPEYAMHGEFSVKSDVFSFGILILEIVSGMKNSGVRDGESIEYLSSFAWRNWRDGTISNTIDPTLNNDSQNEIMRCIHIGLLCVQENVASRPTMNSVVVMLNSPSVTLPIPSEPAFHMDVQNFQDISSAQESINEMSNTELYPR 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05682 664 Pfam Salt stress response/antifungal 38 137 IPR002902 -
Vivi4g05682 664 Pfam Salt stress response/antifungal 165 250 IPR002902 -
Vivi4g05682 664 MobiDBLite consensus disorder prediction 257 284 - -
Vivi4g05682 664 SUPERFAMILY Protein kinase-like (PK-like) 333 621 IPR011009 -
Vivi4g05682 664 FunFam Cysteine-rich receptor-like protein kinase 10 148 254 - -
Vivi4g05682 664 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 40 659 - -
Vivi4g05682 664 SMART serkin_6 351 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g05682 664 Pfam Protein tyrosine and serine/threonine kinase 354 620 IPR001245 GO:0004672|GO:0006468
Vivi4g05682 664 ProSiteProfiles Gnk2-homologous domain profile. 146 253 IPR002902 -
Vivi4g05682 664 Gene3D Phosphorylase Kinase; domain 1 311 426 - -
Vivi4g05682 664 FunFam Cysteine-rich receptor-like protein kinase 28 427 629 - -
Vivi4g05682 664 FunFam Cysteine-rich receptor-like protein kinase 10 311 426 - -
Vivi4g05682 664 Gene3D - 34 139 IPR038408 -
Vivi4g05682 664 Gene3D - 148 254 IPR038408 -
Vivi4g05682 664 ProSitePatterns Serine/Threonine protein kinases active-site signature. 472 484 IPR008271 GO:0004672|GO:0006468
Vivi4g05682 664 CDD STKc_IRAK 357 622 - -
Vivi4g05682 664 Gene3D Transferase(Phosphotransferase) domain 1 427 627 - -
Vivi4g05682 664 ProSiteProfiles Gnk2-homologous domain profile. 35 140 IPR002902 -
Vivi4g05682 664 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 32 140 - -
Vivi4g05682 664 ProSitePatterns Protein kinases ATP-binding region signature. 357 379 IPR017441 GO:0005524
Vivi4g05682 664 ProSiteProfiles Protein kinase domain profile. 351 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05682 Vivi-Chr4 193067875 193072441 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05682 27 664 Receptor kinase-like Gene Family AT4G21410 49.168 0.0 599
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi4g05682 PK_Tyr_Ser-Thr 1.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05682 - - lang:109335396 781.941