Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05681 ATGGTTATGCCTATTCCTTCCTTACTTTTCTCTCTCCAAATCCTCCTAATCATAACTTTCACATATCAAACCAAAGCTGTATACGACGAAATAAACAATTACCACTACTTTTGTGATCAAAGCAACAACAAAGCTAACTACACAGCCAATAGCACCTATCACAAGAACCTCAACACAGTTTTAACCACTCTCACTTCCAACACAGATATCAACTACGGTTTCTACAATTTTTCATTCGGCGAAAACAACGATAAAGTCTATTCAATTGGACTCTGTCGAGGGGATCTTTTGACGAATGACTGTCGCAGTTGCCTCAGCGGCTCAAGAGACAATCTCACAAGCGTTTGTCCAAATCAAAGAGAAGCAATTTTTTGGTCTCAAAACGAAAGATGTATGTTGCGTTACTCCGACCGATTAATATTTGGTATCATGGAAGATGTTCCTACGTTTCATTCAAATAACGAAAATGATTCAGCTGATGTTAATTTGTCTAATGAAGTTGTTACAACTTTGTTGAATAATTTAACAAGTAAAGCTGTGAAAGGTGATTCTAGGTTGAAATATGCTGCTGGAAGTTTACCTGGTCCTACGGTCGAGATTATATATGGTTTGGTTCAGTGTACACCTGATTTGTCTGAAAAAAAGTGCAATTCATGTTTGGTTGAGAGTCTTCAACAAATTCCAAGTTGTTGTAAGGGTAAGATTGGTGGAAGAGTTGTTAGGCCTAGTTGTAATATGAGATTTGAAACATCTTATGAATTTTATGATACTAGTCCTACAGCATCATCATCATCGCCGCCGCCACCGTCAGCACTGTCTCCTCCACCCAACACCACAGGAAAAAGTAATAAGAGTAGTACAATTGGCATTGCTGTGGCGGTCCCAGTTGCTATTGTTGCTTTGGTCTTCATTTTTGTATGCATCTATTTTAAAAGAAGGAAGTCAAAGAAAAAGTTTGAAGATCAAGCTAAGAGAGAAGAATTGTATTGGGGAATGCGTTACAAAATCATCTTAGGTATTGCTCGAGGAATTCTTTATCTCCATGAAGATTCTCGACTACGTATTATTCACCGTGATCTCAAAGCAAGTAACATTCTCTTAGATGAAGATATGAATCCTAAGATAGCTGATTTTGGCATGGCAAGACTTTTTGGTGTAGACCAAACTCAAGAAAACACAAGAAGAATTGTGGGAACCTATGGATATATGGCACCTGAATATGCAATGCATGGAGAATTTTCAGTGAAGTCGGATGTCTTCAGTTTTGGTATATTGATTCTTGAAATTGTAAGCGGTATGAAAAATAGTGGTGTTCGTGATGGGGAAAGTATAGAGTACCTCTCAAGCTTTGCATGGAGAAATTGGAGGGACGGGACGATATCAAATACTATAGATCCCACATTAAATAATGATTCACAAAATGAAATAATGAGATGCATCCATATTGGATTACTTTGTGTTCAAGAGAATGTAGCAAGCAGACCAACAATGAATTCTGTTGTAGTAATGCTAAACAGTCCTTCTGTCACTCTCCCTATTCCTTCAGAACCTGCATTTCATATGGATGTTCAAAACTTTCAAGATATTAGTTCAGCTCAAGAATCAATCAATGAAATGTCAAATACAGAGTTATATCCCCGTTAG 1644 0.3747 MVMPIPSLLFSLQILLIITFTYQTKAVYDEINNYHYFCDQSNNKANYTANSTYHKNLNTVLTTLTSNTDINYGFYNFSFGENNDKVYSIGLCRGDLLTNDCRSCLSGSRDNLTSVCPNQREAIFWSQNERCMLRYSDRLIFGIMEDVPTFHSNNENDSADVNLSNEVVTTLLNNLTSKAVKGDSRLKYAAGSLPGPTVEIIYGLVQCTPDLSEKKCNSCLVESLQQIPSCCKGKIGGRVVRPSCNMRFETSYEFYDTSPTASSSSPPPPSALSPPPNTTGKSNKSSTIGIAVAVPVAIVALVFIFVCIYFKRRKSKKKFEDQAKREELYWGMRYKIILGIARGILYLHEDSRLRIIHRDLKASNILLDEDMNPKIADFGMARLFGVDQTQENTRRIVGTYGYMAPEYAMHGEFSVKSDVFSFGILILEIVSGMKNSGVRDGESIEYLSSFAWRNWRDGTISNTIDPTLNNDSQNEIMRCIHIGLLCVQENVASRPTMNSVVVMLNSPSVTLPIPSEPAFHMDVQNFQDISSAQESINEMSNTELYPR 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05681 547 Gene3D Transferase(Phosphotransferase) domain 1 316 510 - -
Vivi4g05681 547 ProSitePatterns Serine/Threonine protein kinases active-site signature. 355 367 IPR008271 GO:0004672|GO:0006468
Vivi4g05681 547 FunFam Cysteine-rich receptor-like protein kinase 10 148 254 - -
Vivi4g05681 547 Gene3D - 148 254 IPR038408 -
Vivi4g05681 547 Gene3D - 34 139 IPR038408 -
Vivi4g05681 547 ProSiteProfiles Gnk2-homologous domain profile. 146 253 IPR002902 -
Vivi4g05681 547 Pfam Salt stress response/antifungal 165 250 IPR002902 -
Vivi4g05681 547 Pfam Salt stress response/antifungal 38 137 IPR002902 -
Vivi4g05681 547 ProSiteProfiles Protein kinase domain profile. 133 509 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g05681 547 SUPERFAMILY Protein kinase-like (PK-like) 325 504 IPR011009 -
Vivi4g05681 547 SMART serkin_6 229 509 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g05681 547 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 39 318 - -
Vivi4g05681 547 ProSiteProfiles Gnk2-homologous domain profile. 35 140 IPR002902 -
Vivi4g05681 547 MobiDBLite consensus disorder prediction 258 281 - -
Vivi4g05681 547 FunFam Cysteine-rich receptor-like protein kinase 28 312 512 - -
Vivi4g05681 547 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 32 140 - -
Vivi4g05681 547 Pfam Protein tyrosine and serine/threonine kinase 323 503 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05681 Vivi-Chr4 193067873 193072442 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05681 321 547 Receptor kinase-like Gene Family AT4G21400 59.746 4.65e-89 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi4g05681 PK_Tyr_Ser-Thr 5.5e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05681 - - vvo:131627279 484.567