Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05677 ATGGTTATGCCTATTTCTTCATTACTTTGCTCTCTTCAAATTCTCTTAATCATAACTTTGATATCGCAAACAATAGCTATAGTTGTATATGACAAAATAAACAATTCCCACTATATGTGTGATCAAACCAACAACAAAGCTAACTACACAGCCAATAGCACCTACCACAAAAACCTCAACACAGTTTTAACCACTCTAACTTCCAACACAGATATCAACTACGGTTTCTACAATTTTTCATTCGGCAAAAACAAAGACAGAGTCTATTCAATTGGACTCTGTCGAGGCGATCTTTTGCCAAATGATTGTCGCAGTTGTCTCAACGGCTCAAGAGACAATCTCACAAGCGTTTGTCCAAATCAAAGAGAAGCAATTTTTTGGTCTGAAAATGAAAGATGCATGTTGCGTTACTCCGACCGTTTAATATTTGGTATCATGGAAGATGTTCCTAGGTTCGTTTCAGATAACTTCGAAGATTCAGTTGTTGGTTATTCGTCAAATATAGTTGTTACATATTTGTTGAATGATTTAACAAGTATAGCTGCGGAAGGTGATTCTAGGATGAAATATGCTGCTGGAAATTTACCTGGTCCTAAGGGCGAGATTATATATGGTTTGGTTCAGTGTACACCTGATTTGTCTGAAACTAAGTGCAATTCATGTTTAGTTGAGAGTCTTCAACAAATTCAAAGTTGTTGTAAGGGTAAGATTGGTGGAAGAGTTGTTAGGCCTAGTTGTAATATGAGATTTGAAACATCTTTTCAATTTTATGAACCTGGAGCATCACCGCCATCACCACTGTCTCATCCGCCCAACACTACCGGAAGTACTACCATTAGCATCGCTATAGCTGTGCCAGTTGCTATTGTTGTTTTGGTCTTCATTTTTCTCTTCATCTATTTGAAAAAAAGGAAGTCAAAGAAAAAGTTTGAAGAAATTCAAGAAGAAGATCAAGACGACAAAATTGAAATATCTGATTCACTACAATTCAACTTCAACACCATAAGCAATGCTACAAATGACTTCCTTGTTTCTAATAAACTCGGAGAAGGAGGATTCGGAATTGTTTACAAGGGTCAACTTTTCAATGGACAAGAGATTGCTATCAAAAGGTTATCAAGAGATTCTGGACAAGGCGATTTGGAGTTTAAAAATGAGGTGCTTTTAGTGGCTAGACTTCAACACCGTAATTTAGTTAGACTACTCGGCTTTTGTCTAGAAGGAAGAGAGAGATTACTTGTATATGAGTTTGTTCATAACAAAAGTCTCGATTATTTCATTTTTGATCACGCTAAGAGAGGACAATTGTATTGGGAAATGCGTTACAAAATTATTTTAGGTATTGCTCGAGGAATTCTTTATCTTCATGAAGATTCTCGACTACGGATTATTCACCGTGATCTCAAAGCAAGTAACATTCTGATAGATGCAGAGATGAATCCTAAGATAGTCGATTTTGGTATGGCAAGACTTTTTAGTGTGGGCCAAACTCAGAAAAACACAAATAGAATTGTGGGAACCTATGGATATATGGCACCTGAATATGCAATGCATGGAGAATTTTCAGTGAAGTCAGATGTCTTCAGTTTTGGTATATTGGTTCTTGAAATTGTAAGTAGTATGAAAAATAATGGTGTTCGTGACGGAGAAAATATAGAGTATCTCTCTAGCTTTGCATGGAGAAATTGGAAGGACGGGACGTCAACAAATACTATAGATCCCACATTAAATAATGATTCACATAATGAAATAATGAGATGCATTCATATTGGTTTACTTTGTGTTCAAGAGAATGTAGTAAGCAGACCAACAATGAATTTTGTTTTAGTAATTGTTGAAGCGGTAAAGCGGCAAGCAACAAAAGATTTGGAAATATTTATCCGGGAATTATCGTGTCCACAGAGATTGGTGATACCGAACCGCCGTTCGACGGATTCTTAG 1941 0.3642 MVMPISSLLCSLQILLIITLISQTIAIVVYDKINNSHYMCDQTNNKANYTANSTYHKNLNTVLTTLTSNTDINYGFYNFSFGKNKDRVYSIGLCRGDLLPNDCRSCLNGSRDNLTSVCPNQREAIFWSENERCMLRYSDRLIFGIMEDVPRFVSDNFEDSVVGYSSNIVVTYLLNDLTSIAAEGDSRMKYAAGNLPGPKGEIIYGLVQCTPDLSETKCNSCLVESLQQIQSCCKGKIGGRVVRPSCNMRFETSFQFYEPGASPPSPLSHPPNTTGSTTISIAIAVPVAIVVLVFIFLFIYLKKRKSKKKFEEIQEEDQDDKIEISDSLQFNFNTISNATNDFLVSNKLGEGGFGIVYKGQLFNGQEIAIKRLSRDSGQGDLEFKNEVLLVARLQHRNLVRLLGFCLEGRERLLVYEFVHNKSLDYFIFDHAKRGQLYWEMRYKIILGIARGILYLHEDSRLRIIHRDLKASNILIDAEMNPKIVDFGMARLFSVGQTQKNTNRIVGTYGYMAPEYAMHGEFSVKSDVFSFGILVLEIVSSMKNNGVRDGENIEYLSSFAWRNWKDGTSTNTIDPTLNNDSHNEIMRCIHIGLLCVQENVVSRPTMNFVLVIVEAVKRQATKDLEIFIRELSCPQRLVIPNRRSTDS 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05677 646 FunFam Cysteine-rich receptor-like protein kinase 28 418 620 - -
Vivi4g05677 646 SMART serkin_6 342 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g05677 646 FunFam Cysteine-rich receptor-like protein kinase 10 302 417 - -
Vivi4g05677 646 CDD STKc_IRAK 348 609 - -
Vivi4g05677 646 ProSitePatterns Serine/Threonine protein kinases active-site signature. 463 475 IPR008271 GO:0004672|GO:0006468
Vivi4g05677 646 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 81 613 - -
Vivi4g05677 646 ProSiteProfiles Gnk2-homologous domain profile. 37 142 IPR002902 -
Vivi4g05677 646 Gene3D - 154 254 IPR038408 -
Vivi4g05677 646 Gene3D - 35 141 IPR038408 -
Vivi4g05677 646 Gene3D Phosphorylase Kinase; domain 1 302 417 - -
Vivi4g05677 646 Gene3D Transferase(Phosphotransferase) domain 1 418 630 - -
Vivi4g05677 646 Pfam Protein tyrosine and serine/threonine kinase 345 555 IPR001245 GO:0004672|GO:0006468
Vivi4g05677 646 Pfam Salt stress response/antifungal 40 139 IPR002902 -
Vivi4g05677 646 Pfam Salt stress response/antifungal 166 252 IPR002902 -
Vivi4g05677 646 ProSiteProfiles Protein kinase domain profile. 342 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g05677 646 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 34 142 - -
Vivi4g05677 646 ProSitePatterns Protein kinases ATP-binding region signature. 348 370 IPR017441 GO:0005524
Vivi4g05677 646 SUPERFAMILY Protein kinase-like (PK-like) 325 611 IPR011009 -
Vivi4g05677 646 FunFam Cysteine-rich receptor-like protein kinase 10 153 255 - -
Vivi4g05677 646 ProSiteProfiles Gnk2-homologous domain profile. 148 255 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05677 Vivi-Chr4 193033019 193046485 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05677 45 614 Receptor kinase-like Gene Family AT4G21410 49.836 0.0 558
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi4g05677 PK_Tyr_Ser-Thr 8.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05677 - - gmx:113000774 717.613