Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05675 ATGTCTCTCCCTTCCTTACTTTTCTCTCTCCAAATCCTCCTAATCATAACTTTCACATATCAAACCAAAGCTGTATACGACGAAATAAACAATTACCACTACTTTTGTGATCAAAGCAACAACAAAGCTAACTACACAACCAATAGCACCTATCACAAAAACCTCAACACACTCTTAACCACTCTCACTTCCAACACAGATATCAACTACGGTTTCTACAATTTTTCATTCGGCGAAAACAACGATAGAGTCTATTCAATTGGACTCTGTCGAGGTGATCTTTTGCCGAATGATTGTCGCCGTTGCCTCAGCGGCTCAAGGTCAAATCTCACAAGTATCTGTCCAAATCAAAGAGAAGCTATTTTTTGGTCCGAAGACGAAAGATGTATGCTGCGTTACTCCGACCGGTTAATACTAGGTGTCATGGAAGATGTTCCTATGTTTTATTCAAATAACTTGAATGATTCAGTTGATGTTAATTTGTCTAATGAAGCTGTTACAATTTTGTTGGGTAATTTAACAAGTAAAGCTGTGAAAGGTGATTCTAGGATGAAATATGCTGCTGGAAGTTTACCTGGTCCTCAGTACGAGGTTATATATGGTTTGGTTCAGTGTACACCTGATTTGTCTGAAAATGATTGCAGTTCATGTTTGGTTGAGAATCTTCAACAAATTCCAGGTTGTTGTAAAGGTAAGATTGGTGGAAGAGTTGTTAGGCCAAGTTGTAACATGAGATTTGAAACATCTTATCTTTTTTATGAACCTCGAGCATCACCGCCACCGCCGCCGTCTCCTCCGCCTAACACCACCGGAAAAAGCAATACGAGTACTACAATTGGCATTGCTGTGGCGGTCCCAGTTGCTATTGTTGGCTTGGTCTTCATTTTGATATGCATCTATTTTAAACTAAGGAAGTCAAAGAAAAAGTTTGAAGAAGTAAAAGAAGAAGAATATCAAGACGACACAATTGAAATATCTGAGCCGTTGCAATTCAACTTCAACACCATATCAAATGCTACAAATGACTTCTTTATTTCTAATAAACTTGGAGAAGGAGGATTCGGGGTTGTTTACAAAGGTAGGCTTTCCAATGGACAAGAAATTGCTGCCAAAAGGTTGTCAAGGGATTCTGGACAAGGCGATTCCGAATTTAAAAATGAGGTGCTTTTAGTGGCTAAGCTTCAACACCGTAATTTAGTTAGGCTACTCGGCTTCTGTCTAGAAGGAAGAGAAAGAGTACTTGTATATGAGTTTGTTCATAACAAAAGTCTCGATTCTTTCATTTTTGATCAAGCTAAGAGAGCACAATTATATTGGAAAATACGCTACAAAATCATTTTAGATGAAGAGATGAATCCAAAGATAGCCGATTTTGGAATGGCAAGATTATTCGGTGAAGATCAAACTCAGCAAAACACAAACAAAATTGTGGGAACCTATGGATATATGGCTCCTGAATATGTAATGCATGGACAATTCTCAGTGAAGTCAGATGTGTTTAGTTTTGGTATATTGGTTCTTGAAATTGTAAGTGGTATAAAAAATAGTGGCATTCGTGATGGGGAGAATATAGAGTATCTCTCTAGCTTTGCATGGAGAAATTGGAAAGAGGGGATGACAATGAATATCATCGACCCCACATTAAATAATGATTCACGAAATGAAATCATGAGATGCATTCATATTGGATTACTTTGTGTTCAAGAGAATATAGCAAGCCGGCCAACAATGACTTCTGTTGTTGTAATGCTTAATAGTGATTCTGTCACTCTCCCAATACCTTTGGAACCTGCATTTCATATGGATAATCGAAACTTTCAAGATATTAAGTCATGGGGTCATAGTTCAGCTCAAGAATCAGTCAATGAAACTTCAATCACAGAGTTATATCCTCGCTAA 1899 0.3776 MSLPSLLFSLQILLIITFTYQTKAVYDEINNYHYFCDQSNNKANYTTNSTYHKNLNTLLTTLTSNTDINYGFYNFSFGENNDRVYSIGLCRGDLLPNDCRRCLSGSRSNLTSICPNQREAIFWSEDERCMLRYSDRLILGVMEDVPMFYSNNLNDSVDVNLSNEAVTILLGNLTSKAVKGDSRMKYAAGSLPGPQYEVIYGLVQCTPDLSENDCSSCLVENLQQIPGCCKGKIGGRVVRPSCNMRFETSYLFYEPRASPPPPPSPPPNTTGKSNTSTTIGIAVAVPVAIVGLVFILICIYFKLRKSKKKFEEVKEEEYQDDTIEISEPLQFNFNTISNATNDFFISNKLGEGGFGVVYKGRLSNGQEIAAKRLSRDSGQGDSEFKNEVLLVAKLQHRNLVRLLGFCLEGRERVLVYEFVHNKSLDSFIFDQAKRAQLYWKIRYKIILDEEMNPKIADFGMARLFGEDQTQQNTNKIVGTYGYMAPEYVMHGQFSVKSDVFSFGILVLEIVSGIKNSGIRDGENIEYLSSFAWRNWKEGMTMNIIDPTLNNDSRNEIMRCIHIGLLCVQENIASRPTMTSVVVMLNSDSVTLPIPLEPAFHMDNRNFQDIKSWGHSSAQESVNETSITELYPR 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05675 632 Pfam Protein tyrosine and serine/threonine kinase 445 583 IPR001245 GO:0004672|GO:0006468
Vivi4g05675 632 Pfam Protein tyrosine and serine/threonine kinase 346 440 IPR001245 GO:0004672|GO:0006468
Vivi4g05675 632 Gene3D Transferase(Phosphotransferase) domain 1 421 590 - -
Vivi4g05675 632 FunFam Cysteine-rich receptor-like protein kinase 10 146 251 - -
Vivi4g05675 632 Gene3D Phosphorylase Kinase; domain 1 303 418 - -
Vivi4g05675 632 ProSiteProfiles Gnk2-homologous domain profile. 33 138 IPR002902 -
Vivi4g05675 632 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 37 447 - -
Vivi4g05675 632 SUPERFAMILY Protein kinase-like (PK-like) 327 616 IPR011009 -
Vivi4g05675 632 FunFam Cysteine-rich receptor-like protein kinase 10 304 418 - -
Vivi4g05675 632 ProSiteProfiles Gnk2-homologous domain profile. 144 251 IPR002902 -
Vivi4g05675 632 ProSiteProfiles Protein kinase domain profile. 343 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g05675 632 MobiDBLite consensus disorder prediction 255 275 - -
Vivi4g05675 632 ProSitePatterns Protein kinases ATP-binding region signature. 349 371 IPR017441 GO:0005524
Vivi4g05675 632 Pfam Salt stress response/antifungal 36 135 IPR002902 -
Vivi4g05675 632 Pfam Salt stress response/antifungal 165 248 IPR002902 -
Vivi4g05675 632 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 30 138 - -
Vivi4g05675 632 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 464 589 - -
Vivi4g05675 632 Gene3D - 147 250 IPR038408 -
Vivi4g05675 632 Gene3D - 32 137 IPR038408 -
Vivi4g05675 632 MobiDBLite consensus disorder prediction 255 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05675 Vivi-Chr4 193015885 193024338 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05675 25 632 Receptor kinase-like Gene Family AT4G21410 44.228 0.0 530
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi4g05675 PK_Tyr_Ser-Thr 1.7e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05675 - - gmx:113000774 710.294