Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05674 ATGGCTTCTACTTCCTTTCATTTTTCTCTCTTTCTCCTAATAATAACCATTTTCTCATCATCAAAACTAGCAATCGCAGCAAACAACACACAAAATTTCCACTACTTCTGTGATTTCAACAATAGAGGTAACTTCACAAACAACAGCACTTACCAAACTAACCTCAAAACACTTTTATCATCTCTCACTTCCAACACACAAATCAACTACGGTTTCTACAATTTCTCAAACGGCCAAAACACTAACAAAGTAAACGCAATTGCTCTCTGCAGAGGCGATGTTAAAAACCAAAACGACTGCCTCAGTTGCCTAAAAGCTTCAAGCAACAATCTCACACAGCTTTGTCCAAACCAGAAAGAAGCAATTGGTTGGTACGAAGATGAAAAATGCATGCTGCGTTATTCAGATCGATCCATATTTCGATTATTGGAAACAGGACCTGCTTATTATGCACACAACCTGGCTAACGCAACTGATTTGAGCGTGTTCAATGAAACTGTCCGAAACCTGCTAGATAATTTAACTCAGAGAGCTTCATCTGGTGATTCTAGTTTGAAATATGCTGCTGATAGTGCGCGCGGTCCGAATGATCAAACTATATATGGTTTGGTTCAGTGTACGCCAGATTTGTCTGAATCTGATTGTAGTTCTTGTTTGGATCAGTCTATAGCGCGAATACCGATTGATTGTTGTAAAGATAAGATTGGTGGAAGAGTCGTTAGGCCTAGTTGTAACATGAGATTTGAAACCAATTTTCGATTCTATGTTCCTACAGCAACCCCGCCACCACCTCCTCCTTCCTCCACCAATAATACTTCCTCACCTCCTCCACCAGGAAAAAGCAAAACTACCACAATCATTGCCATAGTAGTATCAGTTGTTGCTATTGTGGTGCTCATTTTAATCTTCATCTATTTAAGAGCAAGGAAGCGAAGTAAAAGACTTAGAATTCAAGAAGAAGAAGAAGAAGATGATGATGATGCTGATGAAATTGAAATTTCGGCGTCATTGCAATTCAAGTTAGATACAATAAGAGATGCAACAAATGACTTTTCTGATCAAAATAAACTAGGACAAGGTGGATTTGGAACTGTTTACAAAGGTACACTCCCCAATGGACAAGAGATTGGTGTCAAGAGGTTGTCAAAGGATTCTGGCCAAGGATATTTAGAATTTAAGAATGAAGTTGTTTTAGTGGCTAAGCTTCAACACCGAAATTTAGTCCGACTACTCGGTTTCTGTATAGAAGGAAGAGAAAGACTGCTTGTATATGAATATGTTCACAATAAGAGTCTTGATTACTTCATTTTTGATGAAACCAAGAGAGCGTGTTTAAATTGGGAAAGGAGGTATAAAATCATTGCAGGTATTGCTCGAGGAATTCTTTACCTTCACGAGGATTCTCGTCTACGCATTATCCATCGTGATCTCAAAGCAAGCAATATTCTCTTAGACGGAGAGATGAATCCAAAGATAGCAGATTTTGGTATGGCTAGACTGTTTGCAGTGGACCAAACTCAAGAGAATACAAATAGAATTGTGGGAACCTATGGATATATGGCACCTGAGTATGCAATGCATGGACAGTTTTCTGTGAAGTCAGACGTATTCAGTTTTGGCGTATTGATTCTTGAGATTATAAGTGGTCACAAAAATAGTGGTGTTCGTCGTGGGGATACTAATGAGTATCTTCTAAGCTTTGTATGGAGAAACTGGCGAGACGGGTCGCCAACAAATATTATAGATCCTACAATAATCAATGATTCAGTAAATGAAGTATTGAGATGCATCCACATTGGGTTACTTTGTGTTCAAGAAAATGCATCTAGCAGACCAACTATGGCTTCTGTAGTACTAATGCTTAATAGCCATTCTCTCAGTCTACCAAGACCTTCGGAACCTGCATTTTATGTAGGTAGTGGAGCTGTAGACTTTCAAGATATAATGATGCAATCATCGGAGCATAACTCAGGTCAGGAATCGATAAATCAGGTTTCCATTACAGAGCTATATCCTCGCTAG 2022 0.3887 MASTSFHFSLFLLIITIFSSSKLAIAANNTQNFHYFCDFNNRGNFTNNSTYQTNLKTLLSSLTSNTQINYGFYNFSNGQNTNKVNAIALCRGDVKNQNDCLSCLKASSNNLTQLCPNQKEAIGWYEDEKCMLRYSDRSIFRLLETGPAYYAHNLANATDLSVFNETVRNLLDNLTQRASSGDSSLKYAADSARGPNDQTIYGLVQCTPDLSESDCSSCLDQSIARIPIDCCKDKIGGRVVRPSCNMRFETNFRFYVPTATPPPPPPSSTNNTSSPPPPGKSKTTTIIAIVVSVVAIVVLILIFIYLRARKRSKRLRIQEEEEEDDDDADEIEISASLQFKLDTIRDATNDFSDQNKLGQGGFGTVYKGTLPNGQEIGVKRLSKDSGQGYLEFKNEVVLVAKLQHRNLVRLLGFCIEGRERLLVYEYVHNKSLDYFIFDETKRACLNWERRYKIIAGIARGILYLHEDSRLRIIHRDLKASNILLDGEMNPKIADFGMARLFAVDQTQENTNRIVGTYGYMAPEYAMHGQFSVKSDVFSFGVLILEIISGHKNSGVRRGDTNEYLLSFVWRNWRDGSPTNIIDPTIINDSVNEVLRCIHIGLLCVQENASSRPTMASVVLMLNSHSLSLPRPSEPAFYVGSGAVDFQDIMMQSSEHNSGQESINQVSITELYPR 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05674 673 Gene3D Phosphorylase Kinase; domain 1 311 426 - -
Vivi4g05674 673 Pfam Protein tyrosine and serine/threonine kinase 354 619 IPR001245 GO:0004672|GO:0006468
Vivi4g05674 673 SUPERFAMILY Protein kinase-like (PK-like) 335 621 IPR011009 -
Vivi4g05674 673 MobiDBLite consensus disorder prediction 256 281 - -
Vivi4g05674 673 FunFam Cysteine-rich receptor-like protein kinase 10 311 426 - -
Vivi4g05674 673 Pfam Salt stress response/antifungal 156 250 IPR002902 -
Vivi4g05674 673 Pfam Salt stress response/antifungal 37 136 IPR002902 -
Vivi4g05674 673 MobiDBLite consensus disorder prediction 653 673 - -
Vivi4g05674 673 Gene3D - 147 252 IPR038408 -
Vivi4g05674 673 Gene3D - 31 138 IPR038408 -
Vivi4g05674 673 SMART serkin_6 351 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g05674 673 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 30 139 - -
Vivi4g05674 673 FunFam cysteine-rich receptor-like protein kinase 10 427 628 - -
Vivi4g05674 673 Gene3D Transferase(Phosphotransferase) domain 1 427 628 - -
Vivi4g05674 673 FunFam Cysteine-rich receptor-like protein kinase 10 147 253 - -
Vivi4g05674 673 ProSitePatterns Serine/Threonine protein kinases active-site signature. 472 484 IPR008271 GO:0004672|GO:0006468
Vivi4g05674 673 CDD STKc_IRAK 357 622 - -
Vivi4g05674 673 ProSiteProfiles Protein kinase domain profile. 351 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g05674 673 ProSiteProfiles Gnk2-homologous domain profile. 33 139 IPR002902 -
Vivi4g05674 673 MobiDBLite consensus disorder prediction 257 273 - -
Vivi4g05674 673 ProSiteProfiles Gnk2-homologous domain profile. 145 253 IPR002902 -
Vivi4g05674 673 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 39 672 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05674 Vivi-Chr4 192994370 192998135 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05674 40 673 Receptor kinase-like Gene Family AT4G38830 50.998 0.0 603
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi4g05674 PK_Tyr_Ser-Thr 3.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05674 - - var:108324787 794.653