Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05671 ATGGCTTTTCTTTCCTTTCATTATTCTCTCTTTCTTCTAATAATAACCATTTTCTCATCATCAAAACTAGCCAACGCAGCAAACAACACACAGAATTTCCACTACTTCTGTGATTTCAACAACAGAGGTAACTACACAGACAACAGCATCTACCATACAAACCTTAAAACACTTTTATCATCCCTCACTTCCAACACACAAATCAACTACGGTTTCTACAATTTCTCAAACGGCCAAAACACTAACAAAGTATACGCAATTGCTCTCTGCAGAGGCGATGTTAATAACCAAACCGACTGCCTCAGTTGCCTCAAAGGTTCAAGCAACAATCTCACACAGCTTTGTCCGAACCAGAAAGAAGCAATTGGTTGGTACGAAGACGAAAAATGCATGCTGCGTTATTCAGATCGATCTATATTTCGATTCTTGGAAACAGGACCTCCTTATTATGCACACAACCTGGCTAACGCAACTGATTTGAGCGTGTTCAATGAAACTGTGCGCGACCTGCTGGATAATTTGACTCAGAGAGCTTCGTCGGGTGATTCTAGTTTGAAATATGCTGCTGATAGTGCGCGCGGTCCGAATGATCAAACTATATATGGTTTGGTTCAGTGTACGCCTGATTTGTCTGAATCAGATTGTAGTTCATGTTTGGTTCAGTCTATAGCGCGAATACCGATTGATTGTTGCAAAGATAAGATTGGCGGAAGAGTCGTTAGGCCTAGTTGTAACATGAGATTTGAAACCAATTTTCGATTCTATGATCCTACAGCAACGCCGTCACCTCCTCCACCAGTAAAAAGCAAAACTACCACAATCATTGCCATTGTAGTATCAGTTGTTGCTATTATGGTGCTCATTTTAATCTTCATATATTTAAGAGCAAGGAAGCGAAGTAAAAGACTTAGAATTCAAGAAGAAGAAGAAGAAGAAGAAGAAGATGATGATGCTGATGAAATTGAAATTTCGGAGTCATTGCAATTCAAGTTAGATACAATAAGATATGCAACAAATGACTTTTGTGATGAAAATGAACTTGGACAAGGTGGATTTGGAACTGTCTACAGAGGTACACTCCCCAATGGACAAGAGATTGGTGTCAAGAGGTTGTCAAAGGATTCTGGCCAAGGAGATTTAGAATTTAAGAATGAAGTTGTTTTATTGGCTAAGCTTCAACACCGAAATTTAGTCAGACTACTCGGTTTCTGTATAGAAGGAAGAGAAAGACTGCTTGTATATGAATTTGTTTACAATAAGAGTCTTGATTACTTCATTTTTGATGAAACCAAGAGAGCGTGTTTAAAGTGGGAAAGGAGGTTTAAAATCATTGCAGGTATTGCTCGAGGAATTCTTTACCTTCACGAGGATTCTCGTCTACGCATTATCCATCGTGATCTCAAAGCAAGCAATATTCTCTTAGACGGAGAGATGAATCCAAAGATAGCAGATTTTGGTATGGCTAGACTGTTTGCAGTGGACCAAACTCAAGAGAATACAAATAGAATTGTGGGAACCTATGGATATATGGCACCTGAGTATGTAATGCATGGACAGTTTTCTGTGAAGTCAGACGTATTCAGTTTTGGCGTATTGATTCTTGAGATTATAAGTGGTCACAAAAATAATGATGTTCGTCGTGGGGATACTAATGAGTATCTTCTAAGCTTTGTATGGAGAAACTGGCGAGACGGGTCGCCAACAAATATTATAGATCCTACAATAATCAACGATTCAGTAAATGAAGTATTGAGATGCATCCACATTGGGTTACTTTGTGTTCAAGAAAATGCAAATAGCAGACCAACTATGACTTCTGTTGTACTAATGCTTAATAGCCATTCTTTCAGTCTATCAAGACCTTCAGAACCTGCATTTTATGTAGGTAGTGGAGCTGTAGACTTTCAAGATATAATGGTGCAATCATCGGAGCATAACTCAGGTCAGGAATCGATAAATAAGGTTTCGATTATGGAGCCATATCCTCGCTAG 1992 0.3886 MAFLSFHYSLFLLIITIFSSSKLANAANNTQNFHYFCDFNNRGNYTDNSIYHTNLKTLLSSLTSNTQINYGFYNFSNGQNTNKVYAIALCRGDVNNQTDCLSCLKGSSNNLTQLCPNQKEAIGWYEDEKCMLRYSDRSIFRFLETGPPYYAHNLANATDLSVFNETVRDLLDNLTQRASSGDSSLKYAADSARGPNDQTIYGLVQCTPDLSESDCSSCLVQSIARIPIDCCKDKIGGRVVRPSCNMRFETNFRFYDPTATPSPPPPVKSKTTTIIAIVVSVVAIMVLILIFIYLRARKRSKRLRIQEEEEEEEEDDDADEIEISESLQFKLDTIRYATNDFCDENELGQGGFGTVYRGTLPNGQEIGVKRLSKDSGQGDLEFKNEVVLLAKLQHRNLVRLLGFCIEGRERLLVYEFVYNKSLDYFIFDETKRACLKWERRFKIIAGIARGILYLHEDSRLRIIHRDLKASNILLDGEMNPKIADFGMARLFAVDQTQENTNRIVGTYGYMAPEYVMHGQFSVKSDVFSFGVLILEIISGHKNNDVRRGDTNEYLLSFVWRNWRDGSPTNIIDPTIINDSVNEVLRCIHIGLLCVQENANSRPTMTSVVLMLNSHSFSLSRPSEPAFYVGSGAVDFQDIMVQSSEHNSGQESINKVSIMEPYPR 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05671 663 FunFam Cysteine-rich receptor-like protein kinase 10 302 416 - -
Vivi4g05671 663 Gene3D Phosphorylase Kinase; domain 1 301 416 - -
Vivi4g05671 663 Pfam Protein tyrosine and serine/threonine kinase 345 609 IPR001245 GO:0004672|GO:0006468
Vivi4g05671 663 Pfam Salt stress response/antifungal 37 136 IPR002902 -
Vivi4g05671 663 Pfam Salt stress response/antifungal 156 250 IPR002902 -
Vivi4g05671 663 SMART serkin_6 341 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g05671 663 Gene3D - 30 138 IPR038408 -
Vivi4g05671 663 Gene3D - 148 252 IPR038408 -
Vivi4g05671 663 FunFam Cysteine-rich receptor-like protein kinase 28 417 619 - -
Vivi4g05671 663 CDD TM_EGFR-like 269 302 - -
Vivi4g05671 663 ProSitePatterns Serine/Threonine protein kinases active-site signature. 462 474 IPR008271 GO:0004672|GO:0006468
Vivi4g05671 663 ProSiteProfiles Protein kinase domain profile. 341 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g05671 663 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 38 659 - -
Vivi4g05671 663 CDD STKc_IRAK 347 612 - -
Vivi4g05671 663 FunFam Cysteine-rich receptor-like protein kinase 10 147 253 - -
Vivi4g05671 663 SUPERFAMILY Protein kinase-like (PK-like) 324 611 IPR011009 -
Vivi4g05671 663 ProSiteProfiles Gnk2-homologous domain profile. 33 139 IPR002902 -
Vivi4g05671 663 Coils Coil 293 313 - -
Vivi4g05671 663 Gene3D Transferase(Phosphotransferase) domain 1 418 621 - -
Vivi4g05671 663 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 30 139 - -
Vivi4g05671 663 MobiDBLite consensus disorder prediction 644 663 - -
Vivi4g05671 663 ProSiteProfiles Gnk2-homologous domain profile. 145 253 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05671 Vivi-Chr4 192973886 192977687 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05671 6 663 Receptor kinase-like Gene Family AT4G21410 48.837 0.0 588
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi4g05671 PK_Tyr_Ser-Thr 2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05671 - - var:108324787 813.142