Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05658 ATGTTTTCAATTTTGTCACAAAAAGCACTTTTATGGTCTTTGATTTTGTTAGTGTGTCACTTTGCTATCTCATGCAAAGCTAACCAACAAAGTGAATACCTTTACAAGCTTATTCAATCAAAGAGGTCTCAACAAAAGGATGTTTCTTCATATGAAGAAGCTTATTATTTAAGTGATTTTGATGATGAATATGTTTCATATGAACATGATGTTGAACAACAATTAAAGTTGAAGGAAGCTGATAAAGTGAAGGTTTTGCCTGGTCAACCAAAAGAAGTGGATTTTGATCAATATGCAGGCTATATAAGTGTGGATGCAAAAGAAAATAGAAAACTTTTCTATTACTTTGTGGAATCACCTTTGAATTCTTCCACAAAACCTCTTGTTCTATGGCTCAATGGAGGACCTGGATGTTCTTCATTTGGGTATGGAGCCATGCAAGAAATAGGACCTTTTAGAGTCAATAGTGATGCAAAGACACTTTCTCTTAATAAAGATGCATGGAACAAAGTGGCAAATATTCTCTTCTTAGAGTCTCCAGCCGGAGTTGGATTTTCTTACTCAGAAAACTCTTCAGATTATACTGTTGGTGACAAAAATACAGCCATAGATTCATACAATTTTCTTCAAAATTGGCTCCAAAGATTTCCCGAGTATAAAACGCGAGATTTCTTCATAACTGGTGAAAGTTATGCTGGCCATTATATCCCTCAGCTAGCTGATCTAATTCACTCGAAAAATAAAAATCACAAACCGATCAATTTGAAGGGAATCGCGGTTGGGAACGGTTGGATAGATGATAATCTGTGTTCGAAGGGAATGTATGATTATTATTGGACGCATGCTTTAAACTCGGATGAAACTCATCAAGGAATGGAAAAATATTGTCATTTTAAGAGCTTTAACGAATCAAATGAATGCTATGGATATGTAAATAAAGCTGATGATGAGATTGGAAGTATTGACAATTACAACATATATGCTCCACTTTGTAATTCATCTGCAACAGAAACTAGTTACTCTGAAAATAATTTTGATCCTTGTTCTGATGATTATACGACTGCTTACTTAAATCAACCTATAGTTCAAGAGGCTCTTCATGTTAATGCCATAAAATGGTCACCTTGCAGTAATGTGCTAAATTGGACCGATAGTCCAGCAAGTATTCTACCAACTATAAATAGGTTAAGATCAAGTGGAATAAGCATTTGGATATACAGTGGTGATACAGATGGACGTGTTCCCATAACCTCAACAAGGTATTCAATAAACTCCTTAAACCTACCCGTACATACAGCATGGCGTCCATGGTATAGTTACAAAGAGGTTGGAGGATATTTGATTGGTTACGAAGGGCTTACACTTATCACTGTTAGAGGAGCTGGACACATGGTTCCAAGTTACCAACCACAAAGGGCACTCACTCTCATCTCATCTTTCCTTCAAGGAAAACTTCCTCGATCATTCTCTTAA 1473 0.3605 MFSILSQKALLWSLILLVCHFAISCKANQQSEYLYKLIQSKRSQQKDVSSYEEAYYLSDFDDEYVSYEHDVEQQLKLKEADKVKVLPGQPKEVDFDQYAGYISVDAKENRKLFYYFVESPLNSSTKPLVLWLNGGPGCSSFGYGAMQEIGPFRVNSDAKTLSLNKDAWNKVANILFLESPAGVGFSYSENSSDYTVGDKNTAIDSYNFLQNWLQRFPEYKTRDFFITGESYAGHYIPQLADLIHSKNKNHKPINLKGIAVGNGWIDDNLCSKGMYDYYWTHALNSDETHQGMEKYCHFKSFNESNECYGYVNKADDEIGSIDNYNIYAPLCNSSATETSYSENNFDPCSDDYTTAYLNQPIVQEALHVNAIKWSPCSNVLNWTDSPASILPTINRLRSSGISIWIYSGDTDGRVPITSTRYSINSLNLPVHTAWRPWYSYKEVGGYLIGYEGLTLITVRGAGHMVPSYQPQRALTLISSFLQGKLPRSFS 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05658 490 ProSitePatterns Serine carboxypeptidases, histidine active site. 453 470 IPR033124 GO:0004185
Vivi4g05658 490 PRINTS Carboxypeptidase C serine protease (S10) family signature 164 176 IPR001563 GO:0004185|GO:0006508
Vivi4g05658 490 PRINTS Carboxypeptidase C serine protease (S10) family signature 453 466 IPR001563 GO:0004185|GO:0006508
Vivi4g05658 490 PRINTS Carboxypeptidase C serine protease (S10) family signature 212 237 IPR001563 GO:0004185|GO:0006508
Vivi4g05658 490 PRINTS Carboxypeptidase C serine protease (S10) family signature 177 187 IPR001563 GO:0004185|GO:0006508
Vivi4g05658 490 FunFam Carboxypeptidase 345 485 - -
Vivi4g05658 490 Gene3D - 389 483 - -
Vivi4g05658 490 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 81 470 IPR001563 GO:0004185|GO:0006508
Vivi4g05658 490 Pfam Serine carboxypeptidase 87 483 IPR001563 GO:0004185|GO:0006508
Vivi4g05658 490 SUPERFAMILY alpha/beta-Hydrolases 80 485 IPR029058 -
Vivi4g05658 490 Gene3D - 348 381 - -
Vivi4g05658 490 Gene3D alpha/beta hydrolase 74 342 IPR029058 -
Vivi4g05658 490 FunFam Carboxypeptidase 77 333 - -
Vivi4g05658 490 FunFam Carboxypeptidase 389 483 - -
Vivi4g05658 490 ProSitePatterns Serine carboxypeptidases, serine active site. 226 233 IPR018202 GO:0004185
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05658 Vivi-Chr4 192544410 192547733 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05658 356 484 Calmodulin-binding Proteins AT2G22960 31.884 1.92e-13 67.0