Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05642 ATGAAGACTCCAAATTCGCAATCAGGTAAAGATTTCATGCCAACGGATGATGAGCTTCTTCAAACATTCCTCTACAACAAAATTAACAATGAGCCAATTCCAAATTATCTCAACATTCTTGAATATGATTTGTTCGGAACTGAAAAATCTCCTTTGGATATATGGAACGAGTTTGAAGCTTCGTACTCATACGGTGGAAAAGATTTATATTTTTTTACTACTCTAAAGAAGAAGTCTCCTACGAGCACGCGCTCGATTCGCACTATTGGCAACGGTAATTGGGAAGGCGAAGACACCGGGAAAAAAATATTTGTCAAAGACACGGACCAACTCCTTGGTCTGAAAAAACGTTATCGCTTTGAGAAGAGTAACACCCCTCAAGATGGTGGATGGATTTTGCACGAATATAACCTCGACAAATCTCTGATTAACAATACTTCGGCCAACAATTATGTACTATGCAGATTTAGAAGGAATTTAAAATCAGAATCACAAAATACACAAGCAAAATTAATTATAGGTGATCAATCCAATTCTCATCTAAGAAAAATTTCAAGAACAAAAAATTGTTCTGCGCAACAGAGTAAAGAAAAGACTGTGATTCCTAAAGACAGAGAACCTGTCATTCCTAAACAAGAAGAATCTTTCATTCCTAAACAAGCCAAACCAATTATATCGGACAATAAAGTTTGGGTGAAAAAATATATTATTTATGAAGACGCAATAACTCAATCAAATGATGATCAATTAAATGATGGTGGGAACAAAAGAAAATATGAGGATGACATAGAGTCTATATATAAGGGAAAAAGAAGAAAATGTATAGGAAGTACATTGCCAGAAGAGAAAAGATTTGCTGAACCAAAGGCCTTCTTTGAATATGAGTACAATAAACTATTTTTTGGAGAAAATGTTGAACAATATCCAAAAAGTAGAGTTGATAGTGGAAATAGCAAAACTGAGGTGTTTGGAAGGTCTAACCAAAGAGAGTGGAGCTTTAACAAAGAAGATGATAGTGATATCTTCCTAACAAATAACATTATGTTAAATTAA 1053 0.3409 MKTPNSQSGKDFMPTDDELLQTFLYNKINNEPIPNYLNILEYDLFGTEKSPLDIWNEFEASYSYGGKDLYFFTTLKKKSPTSTRSIRTIGNGNWEGEDTGKKIFVKDTDQLLGLKKRYRFEKSNTPQDGGWILHEYNLDKSLINNTSANNYVLCRFRRNLKSESQNTQAKLIIGDQSNSHLRKISRTKNCSAQQSKEKTVIPKDREPVIPKQEESFIPKQAKPIISDNKVWVKKYIIYEDAITQSNDDQLNDGGNKRKYEDDIESIYKGKRRKCIGSTLPEEKRFAEPKAFFEYEYNKLFFGENVEQYPKSRVDSGNSKTEVFGRSNQREWSFNKEDDSDIFLTNNIMLN 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05642 350 Gene3D NAC domain 15 164 IPR036093 GO:0003677|GO:0006355
Vivi4g05642 350 ProSiteProfiles NAC domain profile. 6 159 IPR003441 GO:0003677|GO:0006355
Vivi4g05642 350 PANTHER NAC TRANSCRIPTION FACTOR 56 9 193 - -
Vivi4g05642 350 Pfam No apical meristem (NAM) protein 9 138 IPR003441 GO:0003677|GO:0006355
Vivi4g05642 350 SUPERFAMILY NAC domain 7 157 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05642 Vivi-Chr4 192358720 192360145 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05642 9 156 NAC Transcription Factor Family AT5G13180 33.775 1.44e-17 79.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi4g05642 NAM 8.5e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05642 - - vvo:131598608 719.924