Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05610 ATGGACGGTTACGATGGAACCGTTAGGCTTGGAGCTATTAACATGAAGTATGATCGCGGCGACTTTGACTCCGGTGCCGACGTGTCGGTTTCTTCTCCGGTTACTAAACAGAAAGCTGCCGCCGCTAAACAATTCATCGAGAATCATTACAAGAATTATCTTCAAGGATTGCAGGATCGCAAAGATAGACGTAGAGCGCTTCAAAGGAGAGTGCAGGAATCTCAATTACCAGTGGAAGAGCAGGAAGTGATGATGAGGAATTTGGAGCGCAAAGAAACTGAGTACATGCGGCTTCAAAGACGTAAAATTGGAATTGATGACTTTGAGCAATTAACAGTAATTGGTAAAGGTGCTTTCGGTGAGGTGAGGTTATGCCGTGGTAAAAGTACTGGAGAGATTTTTGCCATGAAGAAATTGAAGAAGTCAGAGATGCTTAGCCGTGGACAGGTGGAACATGTACGATCTGAGAGGAACTTGCTGGCAGAGGTCGATAGCCGATGCATAGTAAAACTCCATTATTCTTTCCAAGATTCAGATTTCCTATATCTCATCATGGAATATTTACCTGGTGGCGACATTATGACACTGTTAATGAGAGAAGATATTCTTTCTGAAAATGTTGCTCGCTTCTACATTGCTGAAAGTATTCTTGCTATCCACTCAATACATCAACACAACTATGTACATAGGGATATAAAGCCTGATAACCTTATACTGGATAAAAATGGTCATTTGAAGCTTTCAGACTTCGGCTTATGTAAGACTCTTGATGACAAGTATTCAACAATTTTACTAGAAAATGAAGATTTTAACGGTCAAGAATCAACTAGTGAAACTGAAGGATATTTTGTCTCCCCTTGGTTGATGCCAAAGGAAAAATTACAGCAGTGGAAGCGTAATCGCCGTGCATTGGCATATTCAACTGTTGGAACTCTTGACTACATGGCTCCTGAAGTTTTGCTCAAGAAGGGGTATGGAATAGAGTGTGATTGGTGGTCTCTTGGGGCAATCATGTATGAGATGCTTGTTGGATATCCTCCATTTTGTTCTGATGATCCAAGGATGACCTGCCGGAAGATTGTGAATTGGAAAGCATGCCTGAAATTCCCGGAAGAACCCAAGATATCAGCTGAAGCTAAGGATCTCATCTGTAGCTTATTATGTGATGTTGACACAAGATTAGGAACGAGGGGAGTAGACGAAATAAAGGCTCATCCATGGTTCAGGGGTATTCAGTGGGACATGCTTTATGAATCAGAAGCTGCATATAAACCTACAGTCATTGGAGACTTGGACACACAAAACTTTGAGAAGTTTCCTGATGTAGGGCCCCCATCCGTAACAGAAACAATGGGACCTTGGAGAAAGATGTTGACATCCAAAGACACTAATTTCATAGGATATACTTTTAAGAAATCAGACATCCTTAAATCAATTGGAAGTACAGATGAAGATATCAGAGTAAATGGATCATCAAAATCACCCTCATTGATTTCCTTGTTAGGGCAAATGGATTTGCAAGATGTTGTTATTACAGAAAATGAACAGAAGTCAGAAACTTGA 1563 0.4075 MDGYDGTVRLGAINMKYDRGDFDSGADVSVSSPVTKQKAAAAKQFIENHYKNYLQGLQDRKDRRRALQRRVQESQLPVEEQEVMMRNLERKETEYMRLQRRKIGIDDFEQLTVIGKGAFGEVRLCRGKSTGEIFAMKKLKKSEMLSRGQVEHVRSERNLLAEVDSRCIVKLHYSFQDSDFLYLIMEYLPGGDIMTLLMREDILSENVARFYIAESILAIHSIHQHNYVHRDIKPDNLILDKNGHLKLSDFGLCKTLDDKYSTILLENEDFNGQESTSETEGYFVSPWLMPKEKLQQWKRNRRALAYSTVGTLDYMAPEVLLKKGYGIECDWWSLGAIMYEMLVGYPPFCSDDPRMTCRKIVNWKACLKFPEEPKISAEAKDLICSLLCDVDTRLGTRGVDEIKAHPWFRGIQWDMLYESEAAYKPTVIGDLDTQNFEKFPDVGPPSVTETMGPWRKMLTSKDTNFIGYTFKKSDILKSIGSTDEDIRVNGSSKSPSLISLLGQMDLQDVVITENEQKSET 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05610 520 FunFam Non-specific serine/threonine protein kinase 79 191 - -
Vivi4g05610 520 FunFam Non-specific serine/threonine protein kinase 192 259 - -
Vivi4g05610 520 Gene3D Phosphorylase Kinase; domain 1 427 437 - -
Vivi4g05610 520 CDD MobB_NDR_LATS-like 42 103 - -
Vivi4g05610 520 Pfam Protein kinase domain 108 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g05610 520 CDD STKc_NDR_like 106 471 - -
Vivi4g05610 520 ProSitePatterns Protein kinases ATP-binding region signature. 114 137 IPR017441 GO:0005524
Vivi4g05610 520 Pfam Protein kinase C terminal domain 429 470 IPR017892 GO:0004674|GO:0005524|GO:0006468
Vivi4g05610 520 SMART serkin_6 108 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g05610 520 FunFam Non-specific serine/threonine protein kinase 307 426 - -
Vivi4g05610 520 Gene3D Transferase(Phosphotransferase) domain 1 307 426 - -
Vivi4g05610 520 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672|GO:0006468
Vivi4g05610 520 SUPERFAMILY Protein kinase-like (PK-like) 83 457 IPR011009 -
Vivi4g05610 520 Coils Coil 78 101 - -
Vivi4g05610 520 PANTHER SERINE/THREONINE-PROTEIN KINASE 32 448 - -
Vivi4g05610 520 ProSiteProfiles AGC-kinase C-terminal domain profile. 409 480 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vivi4g05610 520 SMART pkinase_C_6 409 472 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vivi4g05610 520 Gene3D Transferase(Phosphotransferase) domain 1 192 259 - -
Vivi4g05610 520 ProSiteProfiles Protein kinase domain profile. 108 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g05610 520 Gene3D Phosphorylase Kinase; domain 1 78 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05610 Vivi-Chr4 191895157 191902824 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05610 1 508 AGC Kinase Gene Family AT5G09890 77.148 0.0 818
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Vivi4g05610 Pkinase 1.2e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05610 K08790 - gmx:100781770 937.176