Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05581 ATGATGAATAGCATCTTTGCAAAACTATTATTCTCAACTTTGTGCATGCTCTTTGTCCTCAAAGCACAATCTTTAATATTTGCAGACCAAAGACTAGCCATAGTCTATCCAGTGATCCAAAACTTCAAGTCCTTGATCACTTCAGATCCATTAGGTGTTACAAAATCATGGACAGGTTCTGATATATGCAACTACAAAGGCTTCTACTGTGATAATCCACCAGATAACACCTCAGCTATTGCTTTAGCTTCTATTGATTTCAATGGCTTTCATCTTAGTGCTTCAACGCTCGATGGCTTTATCGATAAACTTCCTGATATCGCTCTTTTTCATGCAAATTCTAATAATTTCATTGGCACAATCACTTCTAAGATCACCAAACTTCCTTATCTTTATGAGCTTGATTTAAGCAATAACCAATTTTCAGGTCCTTTTCCAATGGCTGTTCTTGGTATGAACAGTTTAACTTTCTTGGATATAAGGTTCAATTTCTTCTCTGGTGGAGTTCCACAGCAGATCTTCACACAAAACCTTGAGATTCTTTTCATCAATGACAATCTTCTCACTCAAAAGTTACCTGAAAATTTAGCTTCAAGTTCAATATTCTTGCTCACTTTGGCTAACAATAAATTCGTCGGGCCGATACCGAGGGATCTTCCGAAGGCTTTGTCGGGTTTAACCGAAGTTGTTTTACTAAACAATGAATTAACAGGCTGTTTGCCTCATGAGATAGGTTATTTTCAAGAGGCTGTAGTTTTTGATGTTGGAAATAATCAACTTACTGGTCCTTTACCATTTTCTCTAAGCTGTCTTGAGAAAGTTGAGGTTGTTAATTTGGCTGGTAACATGTTTTATGGAATTGTTCCTGAGATTGTGTGTGCAGGTTTGATGAACTTGGTGAATTTTTCATTGTCTGATAACTATTTTACTCATGTGGGACCTTTTTGTAGGATGTTGATTCAAAGAGGTGTTCTTGATGTTGGGAGGAATTGTATTCATGATCTTCCTTTTCAAAGATCAGTGATTGAGTGTGCTGAGTTCTTTGCAAAACCAAAGATTTGTCCTTTTATGTGGTTTCATAGTTTCTTTCCTTGTAAGTTTCCATTTCAAAAATCTCAAGTTTCTTCTATTCCTTAG 1137 0.3624 MMNSIFAKLLFSTLCMLFVLKAQSLIFADQRLAIVYPVIQNFKSLITSDPLGVTKSWTGSDICNYKGFYCDNPPDNTSAIALASIDFNGFHLSASTLDGFIDKLPDIALFHANSNNFIGTITSKITKLPYLYELDLSNNQFSGPFPMAVLGMNSLTFLDIRFNFFSGGVPQQIFTQNLEILFINDNLLTQKLPENLASSSIFLLTLANNKFVGPIPRDLPKALSGLTEVVLLNNELTGCLPHEIGYFQEAVVFDVGNNQLTGPLPFSLSCLEKVEVVNLAGNMFYGIVPEIVCAGLMNLVNFSLSDNYFTHVGPFCRMLIQRGVLDVGRNCIHDLPFQRSVIECAEFFAKPKICPFMWFHSFFPCKFPFQKSQVSSIP 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05581 378 Pfam Leucine rich repeat N-terminal domain 40 71 IPR013210 -
Vivi4g05581 378 Gene3D Ribonuclease Inhibitor 203 344 IPR032675 -
Vivi4g05581 378 Gene3D Ribonuclease Inhibitor 37 202 IPR032675 -
Vivi4g05581 378 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 23 366 - -
Vivi4g05581 378 SUPERFAMILY L domain-like 38 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05581 Vivi-Chr4 191339067 191340489 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05581 24 353 Leucine-rich Repeat extension Gene Families AT3G24480 43.030 1.47e-83 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05581 - - tpra:123897584 682.174