Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05564 ATGTCCATGCATAGATCACTATGGTTACCATTGTCCAATCCAACAACATACCAATCTTTAATGGATCCAATTCCAATAACTCCAACTCATTCTCATTCTATTGGATGGCAAGAAACTTGGCCTTTCATTCTTGCAACCCTCTCAATTTATTTTTGTGTTTCAGTTAGTCTTTTATATGGATTCTATGGCGATTCTCGTTTGATTCTTGGTCCAAGTTCGTCGCGTTTGGTGAAAGTAACTTCAGTTTTTGTCGAACAAATTCAAGTATCTAATGAGTATACTACTAGTAAAAATCATGTTCATCTTTATGCGTTCAATGAGAAACCTGAGTTAAGTTCCCAGACAAATTGGACTACGTCGAAGTTTTTATCTCTTCAAGCGTATAGTCGGAAGGGAATTTCTTTGTGGTTAAATAAAGGCTCTACTATATTTTTGAGGTGGGAAGCAGATGCTGGTAGTTTAAATCAACTCAAAGGGATAGTGATTAAAGGAGAAAGGAGGTATGAAAAACTAAAGCCTAAACAAACTACCTTCCCTGAGGCAATGCCAATGGTTGTCAAAGAGTCTCACAATGGTAAAGAAGCTGAATACATTGTTGAGGAAGATGATAGGTACCACATTGCTGTTCTAAACATGAATCCAAGGAACATAATCTTGACCATGAATGTCAATGTTTCTGCAAAGATATATGACACTACAAAGTCCACAAATATGTGCTCTACTTGGAATGGATCATGCAAACTTGACACTTTTTTCCCTATCACATATTATGTAATCCTCACATCATCAAAAAATGGAAATAATGATGATGATGATGCATGGTTTGTTGAAGTTTCTTTCTTGGCTCGAGTTTTTTCCTATGTAATTCTTCTAGGAATGTTCATGATAGTGATTTTTCTGATATTGAAATGTCTTGGCAGTGGCGATGGTGATAACGATAATGTAGTTGCAGCGCAAGAAGTAACCGAAACCGAACCTCTCGTACATGCGCAGACGAATATAGTGACTTATGGAACAAACAAGTTTCATGAAAAAGAAGACTCAGAATCAGAATCAGATGCGTTAAGTAGTTCTTCGGAAGAGTTATACAACGAAAAGTTGTGTATAATTTGTTATGATGAGCAAAGAAATTGTTTCTTTGTTCCTTGTGGTCATTGCGCTACTTGCTATGATTGTGCACAAAGGATTATGAATGGGGAGAGTAAGGTTTGTCCTGTTTGCAGGAGACTTCTTCATAGAGTGAGAAGATTGTTCAATAGTTAG 1263 0.3666 MSMHRSLWLPLSNPTTYQSLMDPIPITPTHSHSIGWQETWPFILATLSIYFCVSVSLLYGFYGDSRLILGPSSSRLVKVTSVFVEQIQVSNEYTTSKNHVHLYAFNEKPELSSQTNWTTSKFLSLQAYSRKGISLWLNKGSTIFLRWEADAGSLNQLKGIVIKGERRYEKLKPKQTTFPEAMPMVVKESHNGKEAEYIVEEDDRYHIAVLNMNPRNIILTMNVNVSAKIYDTTKSTNMCSTWNGSCKLDTFFPITYYVILTSSKNGNNDDDDAWFVEVSFLARVFSYVILLGMFMIVIFLILKCLGSGDGDNDNVVAAQEVTETEPLVHAQTNIVTYGTNKFHEKEDSESESDALSSSSEELYNEKLCIICYDEQRNCFFVPCGHCATCYDCAQRIMNGESKVCPVCRRLLHRVRRLFNS 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05564 420 ProSiteProfiles Zinc finger RING-type profile. 368 408 IPR001841 -
Vivi4g05564 420 Pfam Domain of unknown function (DUF4792) 101 166 IPR032008 -
Vivi4g05564 420 SMART ring_2 368 407 IPR001841 -
Vivi4g05564 420 PANTHER OS05G0521000 PROTEIN 33 419 - -
Vivi4g05564 420 Pfam Domain of unknown function (DUF4793) 195 300 IPR032010 -
Vivi4g05564 420 SUPERFAMILY RING/U-box 358 414 - -
Vivi4g05564 420 Pfam Zinc finger, C3HC4 type (RING finger) 365 411 - -
Vivi4g05564 420 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 341 419 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05564 Vivi-Chr4 190935953 190938652 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05564 350 418 C3H Transcription Factor Family AT1G62370 35.714 2.73e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05564 - - psat:127093067 709.909
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05564 4 190935953 190938652 Vivi4g05564 4 190935953 190938652 ECH