Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05549 ATGTGCAGAGAAAAAACCTTATCCACATCATCTTCTATGCAATCCATTTTATGCTTCTTCAAAAAGTTCATGGTAGTTGTGCTACTCCATCAAACATGTGAGGCAACAATTAGTACTACTAATAACCAAACATACTGTCCACCTTCTTCATGCGGCGAAATCACAAACATCAAACATCCATTTCGACTTAAGAACGATCCAAAAACCTGTGGTGATCCTCGATACGAGTTTTCCTGCGAAAACAACAAGACAACCTTAAAACTGTTTTCAGGTAAATACTATGTGAAATCAATCAACTACAATAACTACACAATAAGAGTAGTTGATGCTGGAATTGAAGAAAATAACTGCTCCGCCGTTCCTCGGTATTTCTTAACTGCTTCCAATTTCACAAGCTACTACAATTATAATTACCAAGGGAATGATCCATACGATGTGAATTATCCAGCTTGGTTGGGACATGTAATATACTTGAATTGTAGCAAACCAGTGAAGAACGATCATAGGTACGTGTATGTGGATACATCTTCTTGTAGAATCAACTCTACTGGCCATGGCTATGTTTATGCCATCGCTGGAGACATCGAAGCTGGGAGATTAAGCGTCGATTGTCGCGTGAAGATTGTTGCTACATCATCAGCTTCTTTTTTTAAGTCCAATAGTGTTGTGGAGAATGATATAGACACTCGAAAGCATTTTACGTATGAGGAAATTCATGAAATGCTTAGCTATGGATTTTACCTTTCGTGGATGAAACGTGGATGTGAAGATTCATGCGACACTGACCAAGAGTACTGTGGCTTGGATGAAAAACATGGTGTTCTTACATGTGCGTCTAATTTTTGTACCACTCCATTGGGACATACCATCATGTGTGAACACATGTCAAAGCTGCGCATATTCATGGAAGATATTATACTTGGCATTGTTAAAGGACTACTGCATATACATGGCATGACCAAAAGCTCTAAATTAGGCAAGGGATTTTCCGATTCTAAAATTGTCATTGAGATAGGAAAAGTAAGTGGTATGTATCTCTTGCCATCATTTACAGTGAGATTTACACTTGGCTTAATGGTTTTCTTTGTGCTATTGATATATACATTTGGAAGAAGACATATATCAATATATGAAAATATTGAGAATTTTCTTCGTGGAAATACCCTAATGCCCATAAGGTATTCATACAGAGATATAAAGAAAATGACTAAGAGTTTCAGAGACAAGTTAGGTGAAGGAGGATTTGGTTCTGTTTATAAAGGAAAGTTAAGAGGTGGGAAATTTGTTGCCATAAAGATGTTGGACAAATCTAAGGGTAATGGACAAGATTTTATTAGTGAAGTCGCAACTATAGGAAGGATACACCATGCCAATGTGGTGAGACTTATTGGATTTTGTGTAGAAGGATCAAAACGTGCACTTGTGTATGAGTTCATGCCTAATGGGTCTCTTGATAAATATATTTCATCTAAAGAGGATGTTATCACACTAACTTCTAAGAAAATGTACGCCATATCTCTTGGAGTGGCTCGGGGAATTGCTTATTTGCATCAAGGTTGTGACATGCAAATTTTGCATTTTGATATCAAACCCCATAACATTCTTCTTGATGAAAACTTTATCGCCAAGGTTTCTGATTTTGGTCTTGCAAAACTTTATCCTAATAACAATAGTATTGTCCCTTTAACTGCAGCAAGAGGAACAATTGGCTACATGGCTCCTGAATTATTCTACAAAAATATTGGAGGAGTATCCTACAAAGCTGATGTGTATAGTTTTGGAATGCTCTTGATGGAAATTGCAAGTAAAAGAAGAAATTTGAATTCACAGGTAGATCGTTCAAGCCATGTTTTCTTTCCTTTTGAGATTTATAATCAATTGGTTGAAGAAAGAGAGATAGAAATGGATGAATACACAAACGAGGACAAATATAATGTAAAGAAGATGTTCATAACTGCATTATGGTGTATACAATTGAAACCAAGTGATCGTCCTGCAATGAACAAAGTAATAGAGATGCTCGAAGATGATATTAAAAATATTGAAATGTCTCCAAAGCCTTCTTTATATCCAAATGAAATTATTGAAGAAGAACTCAAATTCAACTCCCATGAAATTGAATTGGAAGTTGATAATAGTTCTAATAGTTTTATTAAGGAAGATACCACAAAGCCGTTAATGATGAATTATGCTTGA 2196 0.3579 MCREKTLSTSSSMQSILCFFKKFMVVVLLHQTCEATISTTNNQTYCPPSSCGEITNIKHPFRLKNDPKTCGDPRYEFSCENNKTTLKLFSGKYYVKSINYNNYTIRVVDAGIEENNCSAVPRYFLTASNFTSYYNYNYQGNDPYDVNYPAWLGHVIYLNCSKPVKNDHRYVYVDTSSCRINSTGHGYVYAIAGDIEAGRLSVDCRVKIVATSSASFFKSNSVVENDIDTRKHFTYEEIHEMLSYGFYLSWMKRGCEDSCDTDQEYCGLDEKHGVLTCASNFCTTPLGHTIMCEHMSKLRIFMEDIILGIVKGLLHIHGMTKSSKLGKGFSDSKIVIEIGKVSGMYLLPSFTVRFTLGLMVFFVLLIYTFGRRHISIYENIENFLRGNTLMPIRYSYRDIKKMTKSFRDKLGEGGFGSVYKGKLRGGKFVAIKMLDKSKGNGQDFISEVATIGRIHHANVVRLIGFCVEGSKRALVYEFMPNGSLDKYISSKEDVITLTSKKMYAISLGVARGIAYLHQGCDMQILHFDIKPHNILLDENFIAKVSDFGLAKLYPNNNSIVPLTAARGTIGYMAPELFYKNIGGVSYKADVYSFGMLLMEIASKRRNLNSQVDRSSHVFFPFEIYNQLVEEREIEMDEYTNEDKYNVKKMFITALWCIQLKPSDRPAMNKVIEMLEDDIKNIEMSPKPSLYPNEIIEEELKFNSHEIELEVDNSSNSFIKEDTTKPLMMNYA 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05549 731 Gene3D Transferase(Phosphotransferase) domain 1 479 687 - -
Vivi4g05549 731 PANTHER RUST RESISTANCE KINASE LR10-RELATED 377 694 IPR045874 GO:0004672
Vivi4g05549 731 Pfam Wall-associated receptor kinase galacturonan-binding 46 109 IPR025287 GO:0030247
Vivi4g05549 731 ProSiteProfiles Protein kinase domain profile. 404 678 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g05549 731 ProSitePatterns Serine/Threonine protein kinases active-site signature. 524 536 IPR008271 GO:0004672|GO:0006468
Vivi4g05549 731 FunFam serine/threonine-protein kinase PBS1-like 376 478 - -
Vivi4g05549 731 ProSitePatterns Protein kinases ATP-binding region signature. 410 432 IPR017441 GO:0005524
Vivi4g05549 731 FunFam PR5-like receptor kinase 479 685 - -
Vivi4g05549 731 SMART serkin_6 404 674 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g05549 731 Pfam Protein kinase domain 408 672 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g05549 731 Coils Coil 621 641 - -
Vivi4g05549 731 Gene3D Phosphorylase Kinase; domain 1 381 478 - -
Vivi4g05549 731 SUPERFAMILY Protein kinase-like (PK-like) 389 674 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05549 Vivi-Chr4 190592131 190600714 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05549 23 690 Receptor kinase-like Gene Family AT5G38260 33.630 3.57e-105 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vivi4g05549 Pkinase 2.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05549 - - tpra:123893228 1014.22