Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05541 ATGTCAAGGCCTGTTGAGAGAATAGCAGAGATCAATGATGGAAAAGAGCTTTGGAAGATTGTTGTTAGGATTCACCACCGATGGAAAGTTGTCTCCAACAGCAAGGAACATTTTAAAATGATCTTTGTTGACAAATTGGGAGATGATATTCATGCTGTTGTTCCAGCACCGCATGTGTCGGTTTTCACCGAAAAATGCTTATTAGGCCATACTTATACTGTATCTAATTTTAAGGTGGTGCCTTATGTTCTGGCATTCAGGGCATCGGGACACAGATATATGATAAAGTTTACTGCTGGAACGTCTGTTCTTGATGAAGACAAACATGAGATACCCCCGAAATCGATTTTATTTACAAGTTTTTCAGACATCATAACAGGGAGGTTTGACAAACATGTTCTGATTCATGTCGTTGGAATGGTGGATAGTATTGGTTATGCACAGACTGAGTCAGGTGCAAAGAAGCAGCAAATTAGCATGATGTTGCGTGATCACAGCAACAACATGTTGAACTGTACTCTGTGGGAATCATACGCGGATCAGTTCATCAAGTTTAACAAAGTTAGGGTTGCTGCATCACTACCTACAGTTGTGTTGCTTCAGTATGCCAAAGTGAAGGAAGAAGGAAAGTATCCTCTGTCTGTGACAAACACCTACAATGTGACCCTTTTATGTGTTGATGCTGATTTTCCGATCATGAAAGACTTTATTGATAGAATGCCTGAGGAGAGCAAGGTAACCCTCTCTGACCAACTTGGAGGGAATTCACAATATTCCTCCCAAAGTTCTGAAAATCAACAGCTCACTCCTGTGCAAAAATTGTTCTCAAAGGCTGTTGTTTTGCCTATTGCTGAGATTATTCAACTTACGGATGTTACATTTTGCGCTACTGTCGCTACAACAAAATTATTAGTAGCATCTCCGTTTGAATGGTTCTATCGTGCCTGCCATATGTGTCAATCTATAGCGCGCGGGGACAGCCCCCCCTTTGAGTGTGAAGCTGGTCATGAAACCATGGCTGAAGTCCTTAGGTTTTAG 1038 0.4143 MSRPVERIAEINDGKELWKIVVRIHHRWKVVSNSKEHFKMIFVDKLGDDIHAVVPAPHVSVFTEKCLLGHTYTVSNFKVVPYVLAFRASGHRYMIKFTAGTSVLDEDKHEIPPKSILFTSFSDIITGRFDKHVLIHVVGMVDSIGYAQTESGAKKQQISMMLRDHSNNMLNCTLWESYADQFIKFNKVRVAASLPTVVLLQYAKVKEEGKYPLSVTNTYNVTLLCVDADFPIMKDFIDRMPEESKVTLSDQLGGNSQYSSQSSENQQLTPVQKLFSKAVVLPIAEIIQLTDVTFCATVATTKLLVASPFEWFYRACHMCQSIARGDSPPFECEAGHETMAEVLRF 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05541 345 SUPERFAMILY Nucleic acid-binding proteins 7 103 IPR012340 -
Vivi4g05541 345 Gene3D - 3 104 IPR012340 -
Vivi4g05541 345 SUPERFAMILY Nucleic acid-binding proteins 118 243 IPR012340 -
Vivi4g05541 345 CDD RPA1_DBD_A_like 19 103 - -
Vivi4g05541 345 Gene3D - 110 249 IPR012340 -
Vivi4g05541 345 Pfam Domain of unknown function DUF223 40 134 IPR003871 -
Vivi4g05541 345 CDD RPA1_DBD_B_like 137 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05541 Vivi-Chr4 190455512 190457041 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05541 8 328 Core DNA Replication Machinery Family AT5G45400 20.870 8.24e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05541 - - vvo:131613993 667.922