Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05531 ATGGCGGAACGTCGCCCACCGAAGCGCCCTAAAATCAGCAGGGGAGATGATGATTATATGCCTGGAAACATTTTGGAGATCGAGCTTTATAATTTCATGACATTTGATTACTTAAAATGTAAACCCGGTCCTCGCTTGAATCTTGTAATTGGGCCCAATGGTTCTGGAAAGAGTTCTCTTGTATGTGCTATTGCTCTTGGCCTCTGTGGAGAGCCCCAGTTGCTTGGGCGAGCCACGAGTATTGGGGCATATGTGAAGCGGGGAGAAGAGTCTGGTCACATTAAGATTACCTTGAGAGGGGACAATAAAGAGGAGCGCATTACTATTATGCGTAAAATAAATACTAGCAACAAGTCTGAATGGTTTTTCAATGGAAATGTTGTGCCCAAAAAGGACGTGGCTGAAACCATTCAGAGGTTTAATATCCAAGTAAATAATTTGACTCAATTCTTACCGCAAGACAGGGTCTGTGAGTTTGCAAAGTTAACTCCTGTGCAACTTCTGGAAGAGACCGAAAAGGCTGTTGGTGATCCACAACTTCCAGAGCAACATCGTGCACTAATTGATAAAAGTCGTGCATTGAAGCATGTCGAGTTGTCTCTTGAGAAAAACGAAGGAACTTTAAATCAGTTGAAGGAACACAATGCTGAATTAGAGAAGGATGTTGAACGTGTTCGTCAAAGAGACGAACTTCTTGCCAAGGCCGAATCAATGAAAAAGAAATTGCCATGGCTGAGGTATGATATGAAGCAGGCAGAGTATCGTGAAGCTAAGGAGCGTGAAAAGACCGCTGCAAAGGAGTTCGAAAAGGCTGCAAAATTATTAAATGAAGTTAAAAAACCTATTGAGAAACAAAAAGATGAGAAAGCTGCATTAGATGCAAAATGGAAAAAGGTTAACAACCGAATAAATGAGAATGCCAAGAAAAGAATGGAACTTATGGAGAAAGAGAACCAATTGGAAGTGGAACAACAAGGGAAGTACAAAGAGATGGACGAGTTGAGGAGGCAGGAAGAAACTCAGCAGCAGAAATTTAGAAAAGCTAGGGAGGAACTTGCTGCTGCTGAATTTGAACTTGAGAGTCTAAAACCTTATGCACCTCCCAGAGATGAGCTTCTAAGATTAAAAGATGAAATTTTGGATTTGGATGATTCTGCTAATCAAGTGAGACAGAATAGGTCACAAGTAGAAAACGAAATACATACTAAAAAGGTCTCCTTGATGAAGTGTAAAGACAGGTTGAAGGAAATGAATAATAAAAGCAGCAAGTGTTTGCATGCATTGCAAAAATCAGGAGTTGAGAAAATATTTGAAGCTTATAAATGGGTACAAGAGCATCGCCATGAATTCAATAAGGAGGTTTATGGTCCGGTTTTAGTTGAGGTGAATGTCTCAGATCAGTCTCATGCTGGATATCTAGAGGGTCAAGTTGCTTACTACACTTGGAAGTCTTTCATAACACAGGATCCTCGTGATCGGGACTTTTTGGTAAACAAGCTTCGGTACTTTGATGTACCAGTTATAAATTATACTGGTCGTGATAGCTGGCAAAGAGAGCCTCCAGAAATTTCTGCTGATATGCGCGCTCTTGGTATATACTCCCGTTTGGATCAAATTTTTGACGCTCCTGCTGCTGTCAAGGAGGTGTTGATTAGCCAATTTAAACTTGATCATTCATTTATTGGATCGAAAGAAACTGATCAGAAAGCCGATGAGGTCCCAAAATTGGGAATTACTAGTTTATGGACACCCGAAAATCACTATCATTGGACTAACTCTAGATATGGAAATCATGTCTCAGCAGTTGTCGAACAAGTGCAACGTCCACAACTCCTGCTAAATAATTCAAATGCGAGGGACATTGAGAATCTGAACTCTCAGGAAAGGGAGTTTCAAGAACAAATTGCTTCCTTGGAAGAAAGTATCAAAAAGTTTCAAGATGAGGAAAAAAGCTTGAGGAATCAGGCTGCTAATCTTCGTAAACAAAGGGAGGACATTAGTAGTACCGCACAGAATGAGCAAAAGAAACGACAAACAATAATTAGGCATATTGAACAAAAGAAACGGATACTGAAATCAATGGAGGACCAGGATGATTTAGATACCGAGTTAGCGAAGCTTGTTGATCAAGCAACAAAATGTAACATTCAGCGATTCCATAATGCAATTAAAATTAAGGATCTTCTTGTTGAAGCTGTGGATTACAAGAGAAGTTTAGTTGAACAGCGAATGGCTTTCATTGAATTTGAAGCAAAGATTGGAGAAATGGAGGCCAATCTGAAGCAGCATGAAAATTTTGCTCTGCAAGCATCACAGCACTTTAATAACTCTAAGAAAGAGGCTGATGAATGTAGACAGAAGCTTACAGATTTATTGAACTATGCTAAATCAATTGCCCGACTTACACCTAACCTTGAGAAGGAATTTCTCGAGATGCCTACTACAATTGAGGAGTTGGAAGCAGCTATCCAAGCTACAATTTCTCAAGCTAATTCAATCTTATTTGTCAATCCTAACATATTGGAACAATATGAGGATCGTCAAAGACAGATAGAAGATCTTGCAAAAAAGGTTGATGCAGACAAGAAGGAATCTAAAAAGTGTCTAGCTGAATTGGATAACATTAAGGGAAAATGGCTTCCAACACTCAGAAACCTTGTGGCTCAGATAAATGAAACTTTTAGTCGAAATTTTCAACAGATGGCCGTTGCCGGAGAGGTTTCACTAGACGAGCATGATATGGACTTTGATCAATTTGGAATACACATAAAAGTCAAATTCAGGGAAAATGGACAGCTTGAAGTTCTCAGTGCTCATCATCAATCTGGAGGGGAACGATCAGTTTCAACCATTGTTTATCTTGTTTCCCTTCAAGATCTTACAAACTGTCCATTTAGAGTTGTTGATGAGATCAACCAAGGGATGGACCCAATAAATGAAAGGAAGATGTTTCAGCAATTAGTGAGAGCAGCAAGCAAACCAAATACACCGCAGTGTTTCTTACTTACCCCTAAGTTGTTACCAGATCTGCAATATAGTGAGGCATGCAGTATATTGAATGTAATGAATGGCCCCTGGATTGAGCAAACCTCAAAGGTCTGGACTAGTGGTGATCGATGGAGTATTATCACTGGACATGTTGGAGAGACCACATGTTAA 3159 0.3982 MAERRPPKRPKISRGDDDYMPGNILEIELYNFMTFDYLKCKPGPRLNLVIGPNGSGKSSLVCAIALGLCGEPQLLGRATSIGAYVKRGEESGHIKITLRGDNKEERITIMRKINTSNKSEWFFNGNVVPKKDVAETIQRFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQLPEQHRALIDKSRALKHVELSLEKNEGTLNQLKEHNAELEKDVERVRQRDELLAKAESMKKKLPWLRYDMKQAEYREAKEREKTAAKEFEKAAKLLNEVKKPIEKQKDEKAALDAKWKKVNNRINENAKKRMELMEKENQLEVEQQGKYKEMDELRRQEETQQQKFRKAREELAAAEFELESLKPYAPPRDELLRLKDEILDLDDSANQVRQNRSQVENEIHTKKVSLMKCKDRLKEMNNKSSKCLHALQKSGVEKIFEAYKWVQEHRHEFNKEVYGPVLVEVNVSDQSHAGYLEGQVAYYTWKSFITQDPRDRDFLVNKLRYFDVPVINYTGRDSWQREPPEISADMRALGIYSRLDQIFDAPAAVKEVLISQFKLDHSFIGSKETDQKADEVPKLGITSLWTPENHYHWTNSRYGNHVSAVVEQVQRPQLLLNNSNARDIENLNSQEREFQEQIASLEESIKKFQDEEKSLRNQAANLRKQREDISSTAQNEQKKRQTIIRHIEQKKRILKSMEDQDDLDTELAKLVDQATKCNIQRFHNAIKIKDLLVEAVDYKRSLVEQRMAFIEFEAKIGEMEANLKQHENFALQASQHFNNSKKEADECRQKLTDLLNYAKSIARLTPNLEKEFLEMPTTIEELEAAIQATISQANSILFVNPNILEQYEDRQRQIEDLAKKVDADKKESKKCLAELDNIKGKWLPTLRNLVAQINETFSRNFQQMAVAGEVSLDEHDMDFDQFGIHIKVKFRENGQLEVLSAHHQSGGERSVSTIVYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASKPNTPQCFLLTPKLLPDLQYSEACSILNVMNGPWIEQTSKVWTSGDRWSIITGHVGETTC 1052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05531 1052 Coils Coil 621 676 - -
Vivi4g05531 1052 Coils Coil 282 302 - -
Vivi4g05531 1052 Coils Coil 201 235 - -
Vivi4g05531 1052 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 775 1003 IPR027417 -
Vivi4g05531 1052 Coils Coil 841 864 - -
Vivi4g05531 1052 Gene3D - 846 1025 IPR027417 -
Vivi4g05531 1052 FunFam Structural maintenance of chromosomes 5 848 1019 - -
Vivi4g05531 1052 Gene3D - 23 231 IPR027417 -
Vivi4g05531 1052 MobiDBLite consensus disorder prediction 654 677 - -
Vivi4g05531 1052 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 1 1046 IPR027131 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Vivi4g05531 1052 Coils Coil 247 267 - -
Vivi4g05531 1052 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 26 994 IPR027417 -
Vivi4g05531 1052 Coils Coil 372 399 - -
Vivi4g05531 1052 Pfam RecF/RecN/SMC N terminal domain 24 993 IPR003395 -
Vivi4g05531 1052 Coils Coil 304 358 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05531 1 1041 Structural Maintenance of Chromosomes family AT5G15920 61.383 0.0 1284
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05531 K22803 - gmx:100778678 1656.73