Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05530 ATGTTGTGTGCTTGTTCTGGAGAGCAACATAAATTTGAAGAGGTGCCACAGTCACCTGATTCATTAGCAACAAGGGATTTCTCTGCTAGTGGATTGTCTTCAAGGACTGGAGATTGGGAATCTAAGTTCAATGAAAACCAAGTTGAAGATGTTGAATCTACTCTAAAAGAAGCTCTTTCATTGAACTATGAGGAAGCTAGAGCTTTGTTGGGGAGGCTTGAATATCAAAGAGGGAACTTTGATGCTGCCCTTCAAGTGCTTCAGGGTATTGATATTGGTTCTTTGACCCCAAGGATGATCAGGGCTATAGCTGAAAGAAACAAGCCTAGAAAACCTCGTTCCAAGGCGGGTACCGTGCTTCCTAATTTGATGTCAATACATTCAGTAAGCCTGCTTCTTGAAGCAATTTTGCTTAAAGCCAAATCCTTAGAGAAGCTTGAGCGATACGAAGAGGCCGGGAAGGAATGCCGAATAATTGTGGATACAATTGAGTCAGCACTTCCTAATGGAATGCCCGAAGGTATTGGTGAAGTTTGTAAGTTGCAGGAAATGTTCCACAAAGCATTGGAGTTGCTTCCAAATCTATGGATCAAGGCAGGTTTTCTAGATGAAGCTGTCACTGCATATCGGCGTGCACTGGTCAAGCCATGGAATTTGGACCCGAGGAGGTTGGCCTGTCTACAAAAGGATTTAGCTACCACACTACTCTACGGCGGTGTTGAAGTAAACCTACCATCTCACTTGCTAGTGAATGGTTCAACATCACCGATGAGTAACATCGAAGAAGCGATACTTTTGCTATTGATACTATCGAGAATGATGGCGCTTCAGACAATAGATTGGGATGCTGAAATAATCGATCATCTTACATTTTCGCTTTCAATTACTGGGATGTTTGAGTCATTGGCAGATTGTGTAGAGCAGATCCTACCGGGTATCTTCAGTCGAGCCGATAGATGGTATTTTCTTGCTCTTTGTTACAGTGCAGCAGGAAACAACGAAGCAGCCTTGAATCTTTTGAGGAAGGTTTGTGGTAGCTCTGAATCAAAGTGTATACCTCATTTTTCTTCATATTTGTTTGGTGCAAAACTGTGTTCCCAATATCCAAATCATGCTCACGAAGGCATCAAACTTTCACAACAAGTTATTGGTCTAGCCAAGCATCAAAACGAGCATTTTTTAGTACAAGGCCAACAAATTCTCGGTGTTTGTTATGGGGCAGCAGCTAGAACATCTGTAGTGGATTCTGAAAGAGTTAATTTTCAAAAAGAGTCTTTGAACTTTCTAAATGCAGCTGCCCTAACTGGAAATGCGAACGCAGAAGTGCTGTTCAGTCTTGGACTCGAAAATGCGATTCAAAGGAATCTAGATGCGGCTTATCAGAATATAATGAAGTACTCAGACATGACGGTTGGAAGCTCTGCAAGAGGTTGGCAGCTGTTAGCTCTCATAGTATCTGCACAGAAGAGGTTTAAGGATGCCGAAACTATAGTTGATTTTGCTTTAGACGATGCCACGAGCGTAGATCAGTTAGAGCTACTAAGACTCAAAGCTGTACTTCAAATTTCTCAGAAACAACCAAAGCAAGCTATTGAGACCTACAGAGTCTTGTTAGCAGTAATAGAAGCCAGGAAAGAGCTTTCACTTCAAGCTAAGAACTTTGGGTTTGATCAAGCAAAAATATTCCGGGATGAGGCGTTAACCGAACGGAAGTTGGAAAGGGAAGCATGGCAGGATTTAGCAACCATTTATACAGATGTTAATTCCTTTCTTGATGCAAAAGCCTGTGTTGACAAAGCAAAATCGGTCGAGTTTTTCTCTCCCAGAAGTTGGCATACTACAGGGAAGTTGTTTGAAGCACAATCATTATACAAGGAAGCCTTTGTTTCATTCTCAATCTCATTGTCTATAGAACCTGATTATGTTCCAAGTATCGTTTCAACTGCGGAGTTGTTGATTAAACTTGGTACGCAATCGTTTCCAATGGCTAAAAGCTTTTTAATGAATGCTTTGCGATTGGAACCTACAAACCACGACGCATGGTTCAATCTCGGAATGGTTTCAAAAATGGAAGGTTCATTACAACAAGCAGCAGATTGCTTTCAAGCTGCTTATGAGCTGAAGTTTACAACTCCAGTGCAAAAGTTTGAGTGA 2154 0.4155 MLCACSGEQHKFEEVPQSPDSLATRDFSASGLSSRTGDWESKFNENQVEDVESTLKEALSLNYEEARALLGRLEYQRGNFDAALQVLQGIDIGSLTPRMIRAIAERNKPRKPRSKAGTVLPNLMSIHSVSLLLEAILLKAKSLEKLERYEEAGKECRIIVDTIESALPNGMPEGIGEVCKLQEMFHKALELLPNLWIKAGFLDEAVTAYRRALVKPWNLDPRRLACLQKDLATTLLYGGVEVNLPSHLLVNGSTSPMSNIEEAILLLLILSRMMALQTIDWDAEIIDHLTFSLSITGMFESLADCVEQILPGIFSRADRWYFLALCYSAAGNNEAALNLLRKVCGSSESKCIPHFSSYLFGAKLCSQYPNHAHEGIKLSQQVIGLAKHQNEHFLVQGQQILGVCYGAAARTSVVDSERVNFQKESLNFLNAAALTGNANAEVLFSLGLENAIQRNLDAAYQNIMKYSDMTVGSSARGWQLLALIVSAQKRFKDAETIVDFALDDATSVDQLELLRLKAVLQISQKQPKQAIETYRVLLAVIEARKELSLQAKNFGFDQAKIFRDEALTERKLEREAWQDLATIYTDVNSFLDAKACVDKAKSVEFFSPRSWHTTGKLFEAQSLYKEAFVSFSISLSIEPDYVPSIVSTAELLIKLGTQSFPMAKSFLMNALRLEPTNHDAWFNLGMVSKMEGSLQQAADCFQAAYELKFTTPVQKFE 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05530 717 ProSiteProfiles TPR repeat profile. 608 641 IPR019734 GO:0005515
Vivi4g05530 717 Gene3D Tetratricopeptide repeat domain 417 713 IPR011990 GO:0005515
Vivi4g05530 717 Gene3D Tetratricopeptide repeat domain 34 372 IPR011990 GO:0005515
Vivi4g05530 717 ProSiteProfiles TPR repeat profile. 678 711 IPR019734 GO:0005515
Vivi4g05530 717 SUPERFAMILY TPR-like 513 708 IPR011990 GO:0005515
Vivi4g05530 717 SUPERFAMILY TPR-like 133 343 IPR011990 GO:0005515
Vivi4g05530 717 SMART tpr_5 678 711 IPR019734 GO:0005515
Vivi4g05530 717 SMART tpr_5 511 544 IPR019734 GO:0005515
Vivi4g05530 717 SMART tpr_5 317 350 IPR019734 GO:0005515
Vivi4g05530 717 SMART tpr_5 608 641 IPR019734 GO:0005515
Vivi4g05530 717 PANTHER PROTEIN NPG1 1 717 IPR043376 -
Vivi4g05530 717 SUPERFAMILY TPR-like 317 602 IPR011990 GO:0005515
Vivi4g05530 717 Pfam Tetratricopeptide repeat 317 346 IPR019734 GO:0005515
Vivi4g05530 717 MobiDBLite consensus disorder prediction 21 38 - -
Vivi4g05530 717 Coils Coil 56 76 - -
Vivi4g05530 717 MobiDBLite consensus disorder prediction 15 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05530 Vivi-Chr4 190222382 190226529 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05530 1 716 Calmodulin-binding Proteins AT1G27460 57.083 0.0 826
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05530 K21843 - gmx:100799086 1114.37