Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05508 ATGGCAGTGTTAACAGAAATCGAAGAAGATGAACTCGACGAAGAACCAGGCGAGGTAATCGAATCAGCTCCGCCTCAAAAGGTTGGCGAAGAGAGACAACTCACTACCAATTCACCCATAAAAAAGAAGCTCCTCAAACGCGGAATCGGTTGGGAAACCCCCAATTTCAACGATCATGTTACTGTTCATTATGTTGGAACTTTGCTTGATGGAAGAAAATTGGGTTCCACTAGGGTTTCGGATTCTCCTGTCACATTCACACTTGGCCAAAGTGAAGTGTATGCTGGATTGGATGATGGGATTGTCACCATGAAGAAGGGGGAGGTGGCATTGTTTACATTACCTGTTGCTGAGTCAGGAGGTATTCCGCGAGGCACCAACTCGGTTGTGCAGTTTGAGGTGGAACTTGTTTCTTGGATCGCTGTAGTGGATGTTTGCAAAGATGGTGGAATTATCAAGAAAATTATGGAGAAGGGGAAAGGGAATGATCGGCCTGGTGACCTTGATGCAGTTCTTGTGAAGTATCGGGTGGCACTAGTAGATGGCACTGTTGTTGCAGAAACACCGGAAGGAGGAGTTGAATTCTATGTGAACGATGGTCACGTTCTTCCTAGATTGCCGAAAGTGATCATGACTATGACCAGGGGAGAGAAGGCTGAATTAATTTTTCAACCTCAATATGCCTTTGGGGAGACGGGGAGAGAAGCTGGCAGCGGATTCCATTCAATTCCCCCAGACTCAGTGCTGCATGTTAATATTGAATTGGTGTCCTTCAAGCCTGTCATAAATGTTACTGGTGACTCTATGGTGATTAAGAAAATTTTGAAAGAAGGGGAGGGCGCTTTCACTGCCAACGAGGGTGCAAATGTTACTGAAGCTGGAGAACAGAAGAATGATTTTAGCAGCTACGTGAAGTATCAGATGGTAGTTGAAAGGTCCATAGAAACTCAAAGTCACGAACTTCAAAATATTGCTCATAAGATCATCACTGAAGTCAGTTACACAGCTATGCTAGAAGATGGCACTGTATTCGAGAAAAGAGGAATTGATGAAACACAGCCCTTGAAATTCGTAACTGATGAGGAACAAGTGATTACCGGTCTAGACCGAGCAGTGGCAACAATGAAAAAGGGCGAGAAGGCCATAATTAGCATACATCCTGATTATGCATTTGGAAATGTGGAAGTTAGAGAAAATATGGTTATTGTGCCACCAGGCTCGAAAGTAATCTATGACATTGAAGTGATAGATTTTATTAAGGAGAAAGCACCGTGGGAGTTAAATAATACTGAGAAAATTGAGGTAGCCGGGAGGAAGAAAGATGAAGGAAATTTATTATTTAAAAGTGGCAAATATCAGCGAGCAGCGAAGAAGTATGATAAGGCTGCTGATTTTGTTAGTGAAGACGGATCCTTTAGTGATGATGAGCAAAAGTTAGCTAAGTCGTTGAGAGTTTCATGCTGGTTAAATGGTGCAGCTTGTTGCCTTAAACTGAATGACTTTGCTGGAGCAATCAAACTATGTACTCAGGTGCTTGATGTTGAATCTCACAATGTGAAAGCTTTGTATAGACGAGCGCAGGCATATATAGAGACGGGAGACTTTCTTTTAGCAGATGTAGACATCAAGAAAGCTCTTGAGGTGGATCCCCAAAACAGGGAGGTAAAGATGCTGAAAATGAAAGTGAAACAACTTCAAGCTGATAGTGACAAAAAAGACGCCAAACTGTATGAAAATATGTTTGCCCATAAAACCAAGAGATTGAAGGTTGATAAAGAAGAGGATGAAGTGGTGAAAACGGAAATGGACAATGTTGGGGACAGTGCAACTGCTTCTGATGGTGGTTTAATAATTGATTCTTGTTGA 1866 0.4234 MAVLTEIEEDELDEEPGEVIESAPPQKVGEERQLTTNSPIKKKLLKRGIGWETPNFNDHVTVHYVGTLLDGRKLGSTRVSDSPVTFTLGQSEVYAGLDDGIVTMKKGEVALFTLPVAESGGIPRGTNSVVQFEVELVSWIAVVDVCKDGGIIKKIMEKGKGNDRPGDLDAVLVKYRVALVDGTVVAETPEGGVEFYVNDGHVLPRLPKVIMTMTRGEKAELIFQPQYAFGETGREAGSGFHSIPPDSVLHVNIELVSFKPVINVTGDSMVIKKILKEGEGAFTANEGANVTEAGEQKNDFSSYVKYQMVVERSIETQSHELQNIAHKIITEVSYTAMLEDGTVFEKRGIDETQPLKFVTDEEQVITGLDRAVATMKKGEKAIISIHPDYAFGNVEVRENMVIVPPGSKVIYDIEVIDFIKEKAPWELNNTEKIEVAGRKKDEGNLLFKSGKYQRAAKKYDKAADFVSEDGSFSDDEQKLAKSLRVSCWLNGAACCLKLNDFAGAIKLCTQVLDVESHNVKALYRRAQAYIETGDFLLADVDIKKALEVDPQNREVKMLKMKVKQLQADSDKKDAKLYENMFAHKTKRLKVDKEEDEVVKTEMDNVGDSATASDGGLIIDSC 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05508 621 SUPERFAMILY FKBP-like 267 436 - -
Vivi4g05508 621 SMART tpr_5 485 518 IPR019734 GO:0005515
Vivi4g05508 621 SMART tpr_5 519 552 IPR019734 GO:0005515
Vivi4g05508 621 SMART tpr_5 436 469 IPR019734 GO:0005515
Vivi4g05508 621 SUPERFAMILY FKBP-like 144 259 - -
Vivi4g05508 621 Gene3D Tetratricopeptide repeat domain 422 579 IPR011990 GO:0005515
Vivi4g05508 621 Gene3D - 142 259 IPR046357 GO:0003755
Vivi4g05508 621 FunFam Peptidylprolyl isomerase 424 579 - -
Vivi4g05508 621 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 165 256 IPR001179 GO:0003755
Vivi4g05508 621 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 52 136 IPR001179 GO:0003755
Vivi4g05508 621 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 331 416 IPR001179 GO:0003755
Vivi4g05508 621 Pfam Tetratricopeptide repeat 498 559 - -
Vivi4g05508 621 Gene3D - 5 141 IPR046357 GO:0003755
Vivi4g05508 621 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 327 419 IPR001179 GO:0003755
Vivi4g05508 621 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 57 140 IPR001179 GO:0003755
Vivi4g05508 621 Gene3D - 261 421 IPR046357 GO:0003755
Vivi4g05508 621 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 168 259 IPR001179 GO:0003755
Vivi4g05508 621 ProSiteProfiles TPR repeat profile. 519 552 IPR019734 GO:0005515
Vivi4g05508 621 SUPERFAMILY TPR-like 435 583 IPR011990 GO:0005515
Vivi4g05508 621 MobiDBLite consensus disorder prediction 1 18 - -
Vivi4g05508 621 SUPERFAMILY FKBP-like 30 141 - -
Vivi4g05508 621 PANTHER PEPTIDYLPROLYL ISOMERASE 142 260 - -
Vivi4g05508 621 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05508 Vivi-Chr4 189990536 190000175 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05508 27 582 Calmodulin-binding Proteins AT3G25230 48.932 4.37e-179 517
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05508 K09571 - gmx:100798382 815.839