Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05501 ATGGCGGAGCAAACTGAGAAGGCTTATTTGAAGCAACCCAAAGTGTTTCTATGCTCGAAGGTATCTGGGAAGGGGAAGAGGCCTGGTAAGGGTGGGAATCGGTTCTGGAAATCTGTTGGACTTGGATTTAAGACTCCCAGAGATGCCATTGAAGGAACTTATATTGACAAGAAGTGCCCATTCACTGGCAATGTTTCAATCCGTGGTCGTATCATAGCTGGTACCTGTCATAGTGCCAAGATGAATAGGACCATCATTGTTAGGAGAAATTATCTTCATTTCATCAAGAAGTATCAGAGATACGAGAAGCGTCATTCTAATATCCCTGCACACGTTTCACCTTGTTTCCGAGTGAAGGAAGGAGATCATGTTATTATTGGCCAATGCAGGCCACTTTCAAAAACAGTCAGGTTCAATGTATTGAAAGTTATCCCAGCTGGATCTTCTAATCTTGCAAAGAAGGCTTTTACAGGAATATGA 480 0.425 MAEQTEKAYLKQPKVFLCSKVSGKGKRPGKGGNRFWKSVGLGFKTPRDAIEGTYIDKKCPFTGNVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAHVSPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSNLAKKAFTGI 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05501 159 NCBIfam 30S ribosomal protein S17 55 143 IPR028333 -
Vivi4g05501 159 SUPERFAMILY Nucleic acid-binding proteins 68 149 IPR012340 -
Vivi4g05501 159 ProSitePatterns Ribosomal protein S17 signature. 121 133 IPR019979 GO:0003735|GO:0005840|GO:0006412
Vivi4g05501 159 Pfam Ribosomal protein S17 74 142 IPR000266 GO:0003735|GO:0005840|GO:0006412
Vivi4g05501 159 PRINTS Ribosomal protein S17 family signature 88 111 IPR000266 GO:0003735|GO:0005840|GO:0006412
Vivi4g05501 159 PRINTS Ribosomal protein S17 family signature 131 138 IPR000266 GO:0003735|GO:0005840|GO:0006412
Vivi4g05501 159 PRINTS Ribosomal protein S17 family signature 121 131 IPR000266 GO:0003735|GO:0005840|GO:0006412
Vivi4g05501 159 PANTHER 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER 10 150 IPR000266 GO:0003735|GO:0005840|GO:0006412
Vivi4g05501 159 Gene3D - 1 158 - -
Vivi4g05501 159 FunFam 40S ribosomal protein S11 1 158 - -
Vivi4g05501 159 Pfam Ribosomal_S17 N-terminal 4 72 IPR032440 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05501 Vivi-Chr4 189852671 189854530 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05501 1 159 Cytoplasmic Ribosomal Protein Gene Family AT5G23740 88.679 5.14e-98 278