Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05500 ATGCCTTCCTATGATGCTTTGATGGGTTTTGAAACATCTTTCAAAGGTTGTGTTTTTAGTGTATTGGATAGTGAGAAACTGGATCTGAAGTTGTTGATTGAAGAGATGGATTCAATTGATGTTCCATCCGTTTTCATTTGTCCAATTTCACTTGAGCCAATGCAAGAGCCTGTGACTCTTTGCACTGGTCAAACCTACGACAGATCCAACATCCTTAAATGGTTTTCACTTGGTCACAAAACATGTCCAACAACAATGCAAGAGCTTTGGGATGAATCAATCACACCCAACAACACTCTCAAACACTTGATCCTCACTTGGTTCTCACACAAGTACTTGGAAATGAAGAAGAAGCTTGAAGATGTTGAAGGAAGGGTTTTGGAAACATTGGAGACACTTAAGAAGGTGAAGGGTCAAAGTAGAGTGAAAGCTCTTAAGGATCTTAGGAAACTTGTTGTTTCTCATGTTTGTGCAAGAAAAACATTGTTGGAAAATGGTGGGGTTGGTTTGGTTTCATCTTTGTTAGGTCCTTTTACTTCACATGTTGTTGGTTGTGAAGCTATAGGTATCATTGTGAATTTGGATTTGAGTTCGGATTTCAAGAGAAAGAATCTTATGCATCCATCCAAAGTTTCATTGATTGTTGATATCATGAATGAAGGAACTATTGAAACAAAGATGAATTGTGCTAAATTGATTCAAATGTTGTTAATGGAAGAACAAGAACAAGAAACCAAGATTGAGATTGTGTCAAGTTTGAGTCTTTTGGTTGGATTATTAAGATTGGTGAGAGACAAGAAACATCAAAAAGGGATCTTAATTGGTCTCACATTGATTAAAAAAGTACTATCTTGTCATGAATCAATAAGAACTTCAATGATAAGCATAGGAGCAATACCTCAATTGATAGAGATTTTACCAAGTTTGAACAATGAGTGTTTGGAGATAGCACTTTATATATTGGAGATATTGTCAACACTTGAGGAAGGGAAATTGGCATTGAAAGAGTGTCCAAACATTATACCAAATGTGGTGAAGATGTTGATGAGAGTCTCAGAAAATTGTACACAATTCGCGTTGTCGATTTTGTGGGCTATTTACAAACTTGCACCAGAAGAATGTGCTTCAAAGGCTGTGGAAGCTGGATTGGCTTCAAAATTGTTGCTTGTGATTCAGAGTGGTTGTAATCCAGTTTTGAAACAGATGTCTTCTGAGTTTTTGAAAATGTGTAGTGTGAATTATTCTACTAGTAGTATTTTTATTTCTAAGTGTATGCTTACCACTACTATACAATGA 1296 0.3603 MPSYDALMGFETSFKGCVFSVLDSEKLDLKLLIEEMDSIDVPSVFICPISLEPMQEPVTLCTGQTYDRSNILKWFSLGHKTCPTTMQELWDESITPNNTLKHLILTWFSHKYLEMKKKLEDVEGRVLETLETLKKVKGQSRVKALKDLRKLVVSHVCARKTLLENGGVGLVSSLLGPFTSHVVGCEAIGIIVNLDLSSDFKRKNLMHPSKVSLIVDIMNEGTIETKMNCAKLIQMLLMEEQEQETKIEIVSSLSLLVGLLRLVRDKKHQKGILIGLTLIKKVLSCHESIRTSMISIGAIPQLIEILPSLNNECLEIALYILEILSTLEEGKLALKECPNIIPNVVKMLMRVSENCTQFALSILWAIYKLAPEECASKAVEAGLASKLLLVIQSGCNPVLKQMSSEFLKMCSVNYSTSSIFISKCMLTTTIQ 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05500 431 Gene3D - 126 272 IPR011989 -
Vivi4g05500 431 Gene3D - 273 421 IPR011989 -
Vivi4g05500 431 SMART Ubox_2 44 107 IPR003613 GO:0004842|GO:0016567
Vivi4g05500 431 SUPERFAMILY ARM repeat 246 418 IPR016024 -
Vivi4g05500 431 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 30 123 IPR013083 -
Vivi4g05500 431 CDD RING-Ubox_PUB 42 91 IPR045210 -
Vivi4g05500 431 SUPERFAMILY RING/U-box 35 109 - -
Vivi4g05500 431 Pfam U-box domain 41 111 IPR003613 GO:0004842|GO:0016567
Vivi4g05500 431 ProSiteProfiles U-box domain profile. 40 114 IPR003613 GO:0004842|GO:0016567
Vivi4g05500 431 PANTHER WDSAM1 PROTEIN 36 418 IPR045185 GO:0061630
Vivi4g05500 431 SUPERFAMILY ARM repeat 130 262 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05500 Vivi-Chr4 189815658 189817459 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05500 5 431 U-box Gene Family AT3G49810 59.193 0.0 529
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05500 - - gmx:100803878 607.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05500 4 189815658 189817459 Vivi4g05500 4 189815658 189817459 ECH