Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05476 ATGGATCTTGGTGTAATGAGTTTAGATGGTTTAGTCACTTCAGATCCTGACCAAAAAACCAAATGGTTCAATGGATCTGGTTTACTCAAACAAGAGAGATCTGGAACATGTACTGAAGATGAGTTGCTAAGAACTTTCAAGCTTGCCAAAACTGATCAACAACAAAGAAACTCTTGCACTTCTCCTTCTCCTAACTCCTCACTTTTGAGATCTAATGTTACCACTCTTTTCTCTGATGCTCAACACCAACAACAAATGCTTAGTTTCTCAACTCCTAATCCAAAATCAGAATCTTTTTTACTTGACAAAAATACCCCTACATTGTCTTATGCTTATCATCACCAACATCATAATCAACATCATAATCCAATGTCTACTTACAACAGAAACACAGGCTATGGTTCTGGAAGCATGCATGGAGGTTTTAATGGTGTTAGAGGACCATTCACACCTTCTCAATGGATGGAACTTGAACATCAAGCTTTGATCTATAAGTATATTACTGCAAATGTTGCTGTGCCTCATCATTTGCTTATTCCTATCAGAAAAGCTCTTGATTCTGCTGGCTTAAGTACCTTCTCAACTGCACTCCTCAGACCTAATGCATATGCAGTGGGATGGGGAGGATTCCATCTGGGATACTCGAACAACACCGATCCGGAACCAGGAAGGTGTAGACGAACAGATGGAAAGAAATGGCGATGCTCAAGAGATGCCGTTGTCGATCAAAAGTATTGCGAAAGGCATATGAACAGAGGACGCCATCGTTCAAGAAAGCCTGTGGAAGGCCAATCGGGCCAGGCTCTCACCACTGGTGGAACCACAAATACAGCTACTACTAATGTTACTTCTACCATTACTACTCCAAGTGGTCCGTCGAAGCAGATCAATGTTGCCGCTTCTCCTTCTTCGTCTATTGTTGTTCCCGGCGGCAACAACAACGCTACCAACACTCTTTCGTTTGCACATCAGGAACATTCCAAGAATATGAACAGCCTTATTGGACAAGATAACGCTTCTTCTGCTGCCAACACCATCAACAGGATGTTCATGAATAGCAAAGAGAATAACAGCAATAGTGAGAGGATGCAGGACGGTTCGGCACTACCGATGCTGCCACCCACCCTTGAGTTGAAACCAAAGGATGATAATTCCTTCATGATTCAGAAACCACACCTTCCTTATGATGAATCCTCAAGGAACAATGAATTCGGGTTTGTTACTTCCGATTCCCTGCTTAACCCTTCACAGAAAACCACTACCTTGCTTGGTCCTAGAACCTTTGGTTCGTCATCACAGAACCCTACAAACCGTGACACGGGCTCTCAAAATTCCCTTAGGCATTTCATCGACGACTTTCCCAAAACTCACTCTGATCACCACAATCATCATAACCGCTCGAGTGGTTTTTCTTGGCCGGAACTTGACATGCAGTCAGATAGGACACAGCTTTCAATCTCAACACCAATGACTGCCTCGGATTTCATGTCGTTCCCTTCTTCGGCCACCAATGAAAAACTCACACTTTCGCCTCTTAGGCTCTCAAGGGAAATCGACCCTATTCAAATGGGGTTAGGCGTCGGAAGTAGTACTCTCAATAACAATGAATCATCAAACCCTAGTACTAATCATCCCACCACAAGGCAAGCTAATTGGATTCCAATAACTTGGGAGAGTTCAATGGGCGGTCCACTCGGCGAAGTACTTCATCTTAGCAACATTGCTTGCAACGCAAGCGATGATCATTACGGCGGTAACAACATCAACAACAACAACTCGTCGGCTCTAAATCTCATGACAGATGGTTGGGACAATCACAATAGTCCACCAATGGGATCATCACCAACCGGCGTACTTCAAAAAACCGCATTTGGATCACTTTCCAATAGTAGTGCCGGAAGCTCTCCAAGGGCCGAAAACAACAAAACAACTCAAGAAGGAGCAAGTTTGTGCAATGATCATCTAGGATCAACTCTTGGTAATAATAACACTTCCTTTACTCCTTAA 2007 0.4345 MDLGVMSLDGLVTSDPDQKTKWFNGSGLLKQERSGTCTEDELLRTFKLAKTDQQQRNSCTSPSPNSSLLRSNVTTLFSDAQHQQQMLSFSTPNPKSESFLLDKNTPTLSYAYHHQHHNQHHNPMSTYNRNTGYGSGSMHGGFNGVRGPFTPSQWMELEHQALIYKYITANVAVPHHLLIPIRKALDSAGLSTFSTALLRPNAYAVGWGGFHLGYSNNTDPEPGRCRRTDGKKWRCSRDAVVDQKYCERHMNRGRHRSRKPVEGQSGQALTTGGTTNTATTNVTSTITTPSGPSKQINVAASPSSSIVVPGGNNNATNTLSFAHQEHSKNMNSLIGQDNASSAANTINRMFMNSKENNSNSERMQDGSALPMLPPTLELKPKDDNSFMIQKPHLPYDESSRNNEFGFVTSDSLLNPSQKTTTLLGPRTFGSSSQNPTNRDTGSQNSLRHFIDDFPKTHSDHHNHHNRSSGFSWPELDMQSDRTQLSISTPMTASDFMSFPSSATNEKLTLSPLRLSREIDPIQMGLGVGSSTLNNNESSNPSTNHPTTRQANWIPITWESSMGGPLGEVLHLSNIACNASDDHYGGNNINNNNSSALNLMTDGWDNHNSPPMGSSPTGVLQKTAFGSLSNSSAGSSPRAENNKTTQEGASLCNDHLGSTLGNNNTSFTP 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05476 668 ProSiteProfiles WRC domain profile. 219 263 IPR014977 -
Vivi4g05476 668 PANTHER GROWTH-REGULATING FACTOR 5 114 500 IPR031137 GO:0005634|GO:0006351|GO:0032502
Vivi4g05476 668 SMART QLQ_2 147 183 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vivi4g05476 668 MobiDBLite consensus disorder prediction 528 549 - -
Vivi4g05476 668 MobiDBLite consensus disorder prediction 600 668 - -
Vivi4g05476 668 ProSiteProfiles QLQ domain profile. 148 183 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vivi4g05476 668 Pfam WRC 220 262 IPR014977 -
Vivi4g05476 668 MobiDBLite consensus disorder prediction 263 308 - -
Vivi4g05476 668 MobiDBLite consensus disorder prediction 407 449 - -
Vivi4g05476 668 MobiDBLite consensus disorder prediction 407 474 - -
Vivi4g05476 668 MobiDBLite consensus disorder prediction 450 467 - -
Vivi4g05476 668 Pfam QLQ 148 182 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vivi4g05476 668 MobiDBLite consensus disorder prediction 252 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05476 Vivi-Chr4 189280683 189284308 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05476 1 625 GRF Transcription Factor Family AT2G22840 38.354 5.19e-93 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Vivi4g05476 WRC 6.4e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05476 - - cam:101496763 977.237