Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05460 ATGGGTAGAGCTCCTTGTTGTGACAAAGCAAACGTGAAGAAAGGTCCTTGGTCTCCGGAGGAAGATTCTAAGCTCAAATCTTACATAGAACAACATGGTACTGGTGGTAACTGGATTGCTCTACCACAAAAAATTGGTTTGAAACGCTGTGGAAAAAGTTGTCGTTTAAGGTGGTTAAACTATCTTCGCCCTAATCTCAAACATGGTGGTTTTTCTGAAGAAGAAGATAACATCATTTGTAGTCTTTACATTAGTATCGGAAGCAGGTGGTCGATAATTGCAGCTCAATTGCCAGGAAGAACAGATAATGACATAAAGAACTATTGGAACACAAGGTTGAAAAAGAAGCTATTAGGAAAACATCGAAAAGAACAACATCAACAACAACAACAACAAGCACGTAATAGAGGAAACAACAGTGCTAATGTTATTAAGCAAGAAAACAACAATCAATACTTGGTTCAAGAACAAGCATATTTGCCACATCATGTAATGCAAAATTTGCTATCAACACCTCCTCCACCTCCACCTCCGCAGCCGCCGTCAATGTTGCCGTCATACACAAACCAAGGCTTCAATGATCAAGATTCCATTAGGAAACTACTTATCAAGCTTGGAGGAAGATTTTCAGGTGATTATCATCCTCATCATCATCATCATCCTAATTCTAGTACTAATGAGTTTGATGGTTTGAATGTTCAATTCTCAAATAATGCTACTTCTTCTACTCATGAACAAGTTTATGATCAAGAACATGTTGGATCTTCTTCTTGTGTTAATTCTTCAAATGGAAACAATCAAGTACAGTTTGTACAAAATGGTCAATATTTCGACTCGGTGCAAGAAGAAGATCAAGGAAAATTCATCCCTGAAATTGATCATTTGGTATCTACAAATTTTTCACAAAGATTTGATGGGTTGGAATTCTTGTATGGTGATGAAGACATGAGTATTGAGAATAATAAGATAGAAGGTTATAGTTCTACTTGGGGTGAAGCTACTACTTCAAGCTATCATCACCCTCTTGATTCGAAATACCAAGGTTAG 1047 0.3706 MGRAPCCDKANVKKGPWSPEEDSKLKSYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNLKHGGFSEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGKHRKEQHQQQQQQARNRGNNSANVIKQENNNQYLVQEQAYLPHHVMQNLLSTPPPPPPPQPPSMLPSYTNQGFNDQDSIRKLLIKLGGRFSGDYHPHHHHHPNSSTNEFDGLNVQFSNNATSSTHEQVYDQEHVGSSSCVNSSNGNNQVQFVQNGQYFDSVQEEDQGKFIPEIDHLVSTNFSQRFDGLEFLYGDEDMSIENNKIEGYSSTWGEATTSSYHHPLDSKYQG 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05460 348 Gene3D - 7 68 - -
Vivi4g05460 348 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Vivi4g05460 348 CDD SANT 71 113 IPR001005 -
Vivi4g05460 348 MobiDBLite consensus disorder prediction 118 139 - -
Vivi4g05460 348 PANTHER OS09G0431300 PROTEIN 1 277 - -
Vivi4g05460 348 Gene3D - 70 147 - -
Vivi4g05460 348 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Vivi4g05460 348 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Vivi4g05460 348 MobiDBLite consensus disorder prediction 241 260 - -
Vivi4g05460 348 FunFam Transcription factor MYB36 70 140 - -
Vivi4g05460 348 CDD SANT 16 62 IPR001005 -
Vivi4g05460 348 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Vivi4g05460 348 SMART sant 67 115 IPR001005 -
Vivi4g05460 348 SMART sant 13 64 IPR001005 -
Vivi4g05460 348 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Vivi4g05460 348 FunFam Transcription factor RAX3 7 68 - -
Vivi4g05460 348 MobiDBLite consensus disorder prediction 212 234 - -
Vivi4g05460 348 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Vivi4g05460 348 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05460 Vivi-Chr4 189002830 189005031 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05460 1 288 MYB Transcription Factor Family AT3G49690 50.690 2.08e-90 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi4g05460 Myb_DNA-binding 2.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05460 K09422 - gmx:100800290 349.747