Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05459 ATGAATTTTGATCTTGATCTTGATCTAGGTCTAGCCCTTCATGACTATGAAAAGAGAGAAAACAAGAAGAAAATGGAGAGTAAGAATTATCTATCACTTTCATTAGGACCATCAAAGGATGATGATGAAGAAAATGCTATAACTCAAAATTCACTTACTTCTCCAAGTTTAGAGTCTTCGATTTCGAACTCCATGAACATGATGAAGAAGGAGATTGGTGATGAATTTGAGGTAGAGATTGAGAAGGTTCCAATTACAAGGGTTGGAAATGTTGATGAAGATGGTAATTCAAGGAAGAAACTTAGGCTCACAAAACAACAATCAGAAGTGTTGGAAGAAAATTTCAAAGAGCATTCTACTCTTAATCAGAAGCAAAAGCAAGCATTAGCAGAAAGGCTGAAACTACAAGCTAGGCAAGTAGAAGTGTGGTTTCAAAATCGGAGAGCCAGGACAAAAGTGAAACAAACTGAATCAGATTTTGAAGTACTAAAGAAGTGTTGCGAAACTCTAACAGAAGAGAACAAGAAATTGAAGAGAGAGCTGCAAGAACTGAAGTCAGTGCAAACAGTGGTAGCAACACCCTTTTATATGCAGATTCCAACAGCAACACTAACTATGTGTCCTTTGTGTGGTAACAACAAGAATGGCTCAAAGGCTCGATAA 663 0.371 MNFDLDLDLGLALHDYEKRENKKKMESKNYLSLSLGPSKDDDEENAITQNSLTSPSLESSISNSMNMMKKEIGDEFEVEIEKVPITRVGNVDEDGNSRKKLRLTKQQSEVLEENFKEHSTLNQKQKQALAERLKLQARQVEVWFQNRRARTKVKQTESDFEVLKKCCETLTEENKKLKRELQELKSVQTVVATPFYMQIPTATLTMCPLCGNNKNGSKAR 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05459 220 CDD homeodomain 98 155 IPR001356 GO:0003677
Vivi4g05459 220 ProSiteProfiles 'Homeobox' domain profile. 94 154 IPR001356 GO:0003677
Vivi4g05459 220 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 5 212 - -
Vivi4g05459 220 MobiDBLite consensus disorder prediction 19 61 - -
Vivi4g05459 220 SUPERFAMILY Homeodomain-like 93 155 IPR009057 -
Vivi4g05459 220 ProSitePatterns 'Homeobox' domain signature. 129 152 IPR017970 GO:0000981|GO:0006355
Vivi4g05459 220 Pfam Homeodomain 98 152 IPR001356 GO:0003677
Vivi4g05459 220 MobiDBLite consensus disorder prediction 47 61 - -
Vivi4g05459 220 SMART halz 154 199 IPR003106 GO:0006355|GO:0043565
Vivi4g05459 220 Coils Coil 160 187 - -
Vivi4g05459 220 Gene3D - 89 160 - -
Vivi4g05459 220 Pfam Homeobox associated leucine zipper 154 186 IPR003106 GO:0006355|GO:0043565
Vivi4g05459 220 SMART HOX_1 96 158 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05459 Vivi-Chr4 188949414 188951767 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05459 92 210 Homeobox Transcription Factor Family AT4G37790 70.000 3.61e-54 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vivi4g05459 Homeodomain 3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05459 K09338 - gmx:100807072 224.557