Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05456 ATGGGAAGAACTCCTTGTTGTGACAAAGAGCAGGTCAAGAGAGGACCATGGTCTCCTGATGAAGATGCAAAACTCAAGAGTTATATTGAAATTCATGGCACTGTTGAAAATTGGATTTCATTGCCCAAAAAAGCTGATCTTAAGAGGTGTGGGAAGAGTTGTCGTCTAAGGTGGCTGAATTATCTTAGGCCAAACATCAAACATGGAGGCTTTACTGAAGAAGAGGACACCATCATTTGCACACTCTATTCTCAAATTGGTAGCAGATGGTCTGTCATAGCATCAAAACTACATGGCAGAACAGACAATGATGTGAAAAACTATTGGAACACAAAACTGAAGAAAAAATTTATGGCAGGAAAAATTAACCTCAAATCATTATCAGGAAATGACAATACTACCCCTCCAATTGCATCACTACCTCAAAATTCCAACCTCCAAAATTCACAATATTCTCTACTTTCACCATTGCCAATTATGTTAGGAAACAATTTTGATGCTAGTTATGAATTCAACAATGATGAAATAAACAATGGTTTCAACCAAGTTCTTGAAAAAAGCATTGTTGCCTCCGAAATTGGTACGAGTAACAACAATGTTGTTAATTCTATGGTATCCGTGTGTGAAGACTCTTCGAGCATTGCAATGAACAACGACTGTGTATCTATTCAAGATCAAGCTGCTAATGAATCAATGGATCCATTGCTCGATTTCGACTTCGGACTTCATCATGATCATGAGAGAGTTGGTGATCTTGCTTTAACTTGTGGTTTTTTGGATTGGATTGATTTTAATCATTCTGACATAAAATCAAATTGA 819 0.3687 MGRTPCCDKEQVKRGPWSPDEDAKLKSYIEIHGTVENWISLPKKADLKRCGKSCRLRWLNYLRPNIKHGGFTEEEDTIICTLYSQIGSRWSVIASKLHGRTDNDVKNYWNTKLKKKFMAGKINLKSLSGNDNTTPPIASLPQNSNLQNSQYSLLSPLPIMLGNNFDASYEFNNDEINNGFNQVLEKSIVASEIGTSNNNVVNSMVSVCEDSSSIAMNNDCVSIQDQAANESMDPLLDFDFGLHHDHERVGDLALTCGFLDWIDFNHSDIKSN 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05456 272 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Vivi4g05456 272 FunFam Transcription factor RAX3 7 68 - -
Vivi4g05456 272 CDD SANT 71 113 IPR001005 -
Vivi4g05456 272 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Vivi4g05456 272 PANTHER OS09G0431300 PROTEIN 1 224 - -
Vivi4g05456 272 Gene3D - 70 135 - -
Vivi4g05456 272 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Vivi4g05456 272 SMART sant 67 115 IPR001005 -
Vivi4g05456 272 SMART sant 13 64 IPR001005 -
Vivi4g05456 272 CDD SANT 16 62 IPR001005 -
Vivi4g05456 272 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Vivi4g05456 272 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Vivi4g05456 272 Gene3D - 6 68 - -
Vivi4g05456 272 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Vivi4g05456 272 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05456 Vivi-Chr4 188859549 188861611 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05456 1 118 MYB Transcription Factor Family AT3G49690 77.119 1.86e-66 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi4g05456 Myb_DNA-binding 8.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05456 K09422 - gmx:100789985 285.804