LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi4g05434	ATGGAAGAATACACTAATAATCCAAATCCAAATCCAAATCAAAATCAATCTTCTAGGCCAAATTTCTTGTATAACCAGATTCCAATGAACAACAACTCCTTTCATCTTCAATCAAGAGCATCAGAAAATTGTTTTCAGTCAGAACAAGTACATCATCATCATCATCATCAACAAAGTGCTGTGAAAACTGAATCTAATAGTTCTTCACAACTTCATACTTCAATTTTTCATTACCCTAATTTAATGAGAACAAATATTATTCCACAAACAATTATGAATCATCATCAACAAAGTGGTGGTGGAGGAGGAAGTCCTAGTAGCTCTAATGAAGCTGAAGCTATAAAAGCAAAAATCATTGCTCATCCTCAATACTCTAGTCTCTTACAAGCTTACATGGATTGTCAAAAGATTGGAGCACCACCTGAAGTGGTGGCTCGTATGGTGGAAGCAAGGCAAGAGTTTGAAGCAAGACAAAGATCTTCAGTTAACTCAAGAGAATCTTCAAAAGATCCAGAACTAGACCAATTCATGGAAGCATATTATGATATGCTTGTGAAGTATAGAGAAGAATTAACAAGGCCAATACAAGAAGCTATGGATTTCATGAGAAGAATTGAAACTCAGCTAAATATGCTTTGTAATGGACCCCTTAGGATCTTCCCAGATGATAAAAATGAAGGAGTTGGTTCATCAGAAGAAGAACAAGAGAACAGTGGCGGAGAAACCGATCAAGTTCCCGAGATCGATCCTCGCGCCGAAGACCGTGAACTGAAAAACCATCTCCTGAAGAAATACAGTGGTTACTTAAGTAGCCTTAAACAAGAACTTTCCAAGAAGAAAAAGAAAGGAAAACTCCCTAAAGAAGCTAGACAAAAACTACTCAACTGGTGGGAATTGCACTACAAATGGCCATACCCTTCCGAATCGGAGAAGGTGGCATTGGCTGAATCAACAGGTTTGGATCAGAAGCAAATAAATAACTGGTTTATAAATCAAAGAAAGAGGCACTGGAAACCATCTGAAGACATGCAGTTTATGGTGATGGATGGACTGCATCCACAGAGTGCAGCTCTTTATATGGATGGTCATTACATGGCTGATGGACCCTATCGTTTAGGGCCATAA	1125	0.3831	MEEYTNNPNPNPNQNQSSRPNFLYNQIPMNNNSFHLQSRASENCFQSEQVHHHHHHQQSAVKTESNSSSQLHTSIFHYPNLMRTNIIPQTIMNHHQQSGGGGGSPSSSNEAEAIKAKIIAHPQYSSLLQAYMDCQKIGAPPEVVARMVEARQEFEARQRSSVNSRESSKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIETQLNMLCNGPLRIFPDDKNEGVGSSEEEQENSGGETDQVPEIDPRAEDRELKNHLLKKYSGYLSSLKQELSKKKKKGKLPKEARQKLLNWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQSAALYMDGHYMADGPYRLGP	374

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi4g05434	374	SMART	KNOX2_2	163	214	IPR005541	GO:0003677\|GO:0005634
	Vivi4g05434	374	Pfam	KNOX1 domain	113	155	IPR005540	GO:0003677\|GO:0005634
	Vivi4g05434	374	ProSiteProfiles	'Homeobox' domain profile.	276	339	IPR001356	GO:0003677
	Vivi4g05434	374	Gene3D	-	273	346	-	-
	Vivi4g05434	374	ProSiteProfiles	ELK domain profile.	256	276	IPR005539	GO:0003677
	Vivi4g05434	374	CDD	homeodomain	288	340	IPR001356	GO:0003677
	Vivi4g05434	374	Pfam	ELK domain	256	277	IPR005539	GO:0003677
	Vivi4g05434	374	PANTHER	HOMEOBOX PROTEIN TRANSCRIPTION FACTORS	50	346	-	-
	Vivi4g05434	374	SMART	KNOX1_2	112	156	IPR005540	GO:0003677\|GO:0005634
	Vivi4g05434	374	SMART	ELK_2	256	277	IPR005539	GO:0003677
	Vivi4g05434	374	FunFam	Homeobox protein knotted-1-like 2	281	343	-	-
	Vivi4g05434	374	Pfam	Homeobox KN domain	296	335	IPR008422	GO:0003677\|GO:0006355
	Vivi4g05434	374	SMART	HOX_1	278	343	IPR001356	GO:0003677
	Vivi4g05434	374	MobiDBLite	consensus disorder prediction	47	70	-	-
	Vivi4g05434	374	MobiDBLite	consensus disorder prediction	1	28	-	-
	Vivi4g05434	374	Pfam	KNOX2 domain	168	213	IPR005541	GO:0003677\|GO:0005634
	Vivi4g05434	374	ProSitePatterns	'Homeobox' domain signature.	314	337	IPR017970	GO:0000981\|GO:0006355
	Vivi4g05434	374	SUPERFAMILY	Homeodomain-like	277	351	IPR009057	-
	Vivi4g05434	374	MobiDBLite	consensus disorder prediction	222	250	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi4g05434	Vivi-Chr4	188320904	188325763	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi4g05434	36	374	Homeobox Transcription Factor Family	AT4G08150	70.349	1.64e-156	444

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-KNOX	Vivi4g05434		KNOX2	3.7e-25	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi4g05434	-		-	gmx:100800822	527.324