Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05417 ATGCTGTCAAAATCAATGACGAGTGTATCTGAAGCTCTAAATAAGTTCCAGGATATAGGGTTTACTTGTGAATACAAATACGACGGAGAACGTGCTCAGATACATTACATGGAAAATGGCTCAGTTGAGATTTATAGTAGGAATGCTCAACGGAACACTGAAAAATTTCCTGATGTTGTGGCTGCAGTTTCAAGGTTGAAGAAAAGAACTGTATCGTCATTTGTTATTGATTGTGAATTGGTTGCATACGATCGTGCAAAACAGAAATTCTTTCCTTTCCAGGTGCTTAGTACCCGCTCCCGCAAAAATGTAGCTGCGAGTGGCATTAATGTTGATGTATGCATATTTGCTTTTGATTTGTTGTATCTTAATGGCCAAGCACTGCTTCTGGAAAATCTGAAAATTCGTAGAGAGCATCTTTATGCCTCATTTGAGGAGAAATCTGGATTGCTTCAGTTTGCAACGTCACTAACATCAAATGATACCGAGGAAATACAAAAGTTTCTCGACGAAGTCGTGGATGCTACCTTCATTCTTATAAAGGTATTAAGGTATAATGGAAGAAGCGGAGTACCAAATATAAAGTATTCATGGAGACCCACTTGA 606 0.3845 MLSKSMTSVSEALNKFQDIGFTCEYKYDGERAQIHYMENGSVEIYSRNAQRNTEKFPDVVAAVSRLKKRTVSSFVIDCELVAYDRAKQKFFPFQVLSTRSRKNVAASGINVDVCIFAFDLLYLNGQALLLENLKIRREHLYASFEEKSGLLQFATSLTSNDTEEIQKFLDEVVDATFILIKVLRYNGRSGVPNIKYSWRPT 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05417 201 ProSiteProfiles ATP-dependent DNA ligase family profile. 106 201 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Vivi4g05417 201 CDD Adenylation_DNA_ligase_I_Euk 1 186 - -
Vivi4g05417 201 Gene3D DNA ligase/mRNA capping enzyme 29 154 - -
Vivi4g05417 201 FunFam DNA ligase 29 154 - -
Vivi4g05417 201 Gene3D - 10 175 - -
Vivi4g05417 201 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 24 32 IPR016059 GO:0003909
Vivi4g05417 201 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 1 175 - -
Vivi4g05417 201 Pfam ATP dependent DNA ligase domain 1 175 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Vivi4g05417 201 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 3 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05417 Vivi-Chr4 187950016 187957855 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05417 1 183 Core DNA Replication Machinery Family AT1G08130 67.027 1.26e-83 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05417 K10747 - vvo:131596423 397.127