Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05412 ATGGGTATCTGCATATCCGTTGCATCTTCAGAGATTCATGGAATCCCTCAAGTTCATGATGAGAATGTCATGATATTTGAAGCAAACAAGGTTCGACATGAGACTAAGAGACTTTGTTCTGTTTACTCTAAACAAGGTACTAAAGGTCTCAACCAAGATGCTGCATCTCTCTACCAGGATTATGGGATAGAAGATGGAGCATTTTGTGGTGTTTATGATGGACATGGAAGGAATGGACATATAGTAAGCAAGATAGTAAACAATAGTTTACCATCTCTCATATTGAGCCAAAAGAATGCTATTGAAGAGAATGATACAACAAAAAATGGTGTTAACAACAAACAAAACAAATTTTCAAATAACTTTCTAAAATGGAAAGAAGCTATTCTTGGTGCTTTCGGTGTGATGGATGATAAGGTGAAACAACAAGAGAATCTAGATTGTTCTTGTAGTGGAACCACTGCTGTAGTTGTCATAAGACAGGGTAATGGTCTTGTCATAGCTAACTTGGGTGACTCAAGAGCAATCTTAGGGACAATTCATGATGATAAACTCAAAGCTATTCAGTTGACTACAGATTTGAAACCTGGATTGCCTTGCGAAGCAAAGAGAATAAGAAGTTGCAACGGTTGCGTGTATGCGTTAAAGGAAGAACCACATGTCCAACGAGTCTGGTTGCCAAACGAGAACTACCCTGGTCTAGCCATGTCTAGAGCTTTTGGAGATTTCATACTAAAAGATCATGGTGTTATTGCCATTCCAGATATTTGGTACCACCCTTTAACATCAAATGACCAGTTTATCGTTCTTGCAAGTGATGGGGTGTGGGATGTACTAAGTAATGAAGAGGTTGCATCAATTGTGTGGATGGTGGAAAGTGAAGAGGAAGCTGCAAGGGCAGTGGTGGAAGCAGCCACAGCTGCATGGGCTAAGAAGTACCCTTCCTCTAGGGTAGATGATTGCACTGTGGTTTGCCTTTTCCTGCAGAAGAAACCACAAAACTTGGGATATATAGAAAGTGGAAAATTAGGTTAA 1035 0.399 MGICISVASSEIHGIPQVHDENVMIFEANKVRHETKRLCSVYSKQGTKGLNQDAASLYQDYGIEDGAFCGVYDGHGRNGHIVSKIVNNSLPSLILSQKNAIEENDTTKNGVNNKQNKFSNNFLKWKEAILGAFGVMDDKVKQQENLDCSCSGTTAVVVIRQGNGLVIANLGDSRAILGTIHDDKLKAIQLTTDLKPGLPCEAKRIRSCNGCVYALKEEPHVQRVWLPNENYPGLAMSRAFGDFILKDHGVIAIPDIWYHPLTSNDQFIVLASDGVWDVLSNEEVASIVWMVESEEEAARAVVEAATAAWAKKYPSSRVDDCTVVCLFLQKKPQNLGYIESGKLG 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05412 344 SUPERFAMILY PP2C-like 30 329 IPR036457 -
Vivi4g05412 344 PANTHER PROTEIN PHOSPHATASE 39 326 IPR015655 GO:0004722|GO:0006470
Vivi4g05412 344 CDD PP2Cc 37 328 IPR001932 -
Vivi4g05412 344 Gene3D - 20 331 IPR036457 -
Vivi4g05412 344 Pfam Protein phosphatase 2C 64 307 IPR001932 -
Vivi4g05412 344 ProSiteProfiles PPM-type phosphatase domain profile. 38 328 IPR001932 -
Vivi4g05412 344 SMART PP2C_4 28 326 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05412 Vivi-Chr4 187906374 187908037 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05412 1 333 PP2C-type Phosphatase Gene Family AT5G26010 53.235 1.28e-106 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05412 - - aip:107605550 460.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05412 4 187906374 187908037 Vivi4g05412 4 187906374 187908037 ECH
Vivi4g05412 4 187906374 187908037 Vivi4g05412 4 187906374 187908037 PCT