Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05406 ATGGAGAATGATGTGTACAATGCTCAAATGAACATGACTGGTCAAATTTCATCTGTCATAGAAGATATCACACATCATTGCTATTCATTTGATCTTAACAACCAACACATTATAAATGGAATTCCAATACTTTCTGGTGAGCAAAATCAAGAACATCAACATGTAAGTAGTAATAACCATGTTGATGGTGGTAGCACTAGCAGCTTCATGAATCATCATCAAACTATTGCTGATTCTACTTCATTTGTTTCATCACAACAAGGAAGGACTATCGTGGAAAATCCCTCAAATCCATCGAATCCTTCGAATCTCATTGTTAACAATGATTTTCATGATAATTTAGAAGCTATGGTTCCTTACATGTTCAATAATTGGCATGATACTTCAAGTTCAAACCCTTTTGGTCATAATAATAGCTATGTTAACAAGTTTATGAAACCTCAAGAGGGTAACGGTGGAACCGAATTCATGTCGTATTCGACGATTGCGAACATTGATCCGAATGGATGGCAATCATCAAATCTTGCTTATAGTTCATCAAATTGTAGCAATGAGCTTTCACTAAGTCTTGCAACGTCTCCGAATTCAGGTCAGTGTTCGGAGATTAGTTGCTCTGACTTGACTCATAGCATGAATGGAACAAGATCGGGTTTGGAACAAGCTTCTTGTAGTAGTATGGAACTTTCTATGAGTTTAGGTAATAATAAACATGTTAAATTCTCGCCCGCGTTATTAGGATCAAGATACCTTGCTGTAATTCAGGAGATACTTGTTCAAATTGCTACTTATTCTTTTGAGAATCTAGATGAGATAAGTTACTCAGGCTCTGGTGTTAGAGGGCAAGGAAATAAATCGAGTTCGTCGAACACGACCAAGAGAAGGATAGGAATAAACAGCGATGCGAATTCTAAGTCGGAGATGTATGCTGATTCTTCAATGCAAAGGCAGGCTGCTGAATCAAAGAAATCACAACTTCTGATGCTTCTACAGCTGGTGGATAATCAATACAGTCAATGTTTGGATGAGGTTCACACTGTTGTATCTGCATTTCATGCTGCTACTGAGCTGGATCCACATATACATGCACATTTTGCTGTCAAAACGGTTTCTCGACTCTATAAGGATTTGAGAGAGAGGATAAGCAATCAAATTCTTGCCATGGGATCGAATTTTAATAGCTCGCGTTCGGAAGAGGATAAGGAATTGTCTTTAGAAACTTCGTTCATTCAGAAGCAATGGGCTCTACAACAGATGAAAAGGAAGGATCAGTTATGGAGACCTCAAAGGGGCTTGCCAGAAAGATCTGTTTCCGTTCTACGCGATTGGATGTTTCAGAATTTCCTCCATCCGTATCCTAAAGATGCGGAGAAGCATTTACTTGCGATAAAAAGTGGATTGACTAGAAGTCAGGTATCTAATTGGTTTATAAATGCGCGTGTTCGGCTATGGAAGCCGTTGATTGAGGAAATGTATGCTGAAATGAATAGAAGAAAAGCTTGTAGAAATGAAGGAGAAAACGAGAGCAGTGAAAGAAGCAGAATAAGCATAAACAATCAAATGTTTAATATCAATTGA 1575 0.381 MENDVYNAQMNMTGQISSVIEDITHHCYSFDLNNQHIINGIPILSGEQNQEHQHVSSNNHVDGGSTSSFMNHHQTIADSTSFVSSQQGRTIVENPSNPSNPSNLIVNNDFHDNLEAMVPYMFNNWHDTSSSNPFGHNNSYVNKFMKPQEGNGGTEFMSYSTIANIDPNGWQSSNLAYSSSNCSNELSLSLATSPNSGQCSEISCSDLTHSMNGTRSGLEQASCSSMELSMSLGNNKHVKFSPALLGSRYLAVIQEILVQIATYSFENLDEISYSGSGVRGQGNKSSSSNTTKRRIGINSDANSKSEMYADSSMQRQAAESKKSQLLMLLQLVDNQYSQCLDEVHTVVSAFHAATELDPHIHAHFAVKTVSRLYKDLRERISNQILAMGSNFNSSRSEEDKELSLETSFIQKQWALQQMKRKDQLWRPQRGLPERSVSVLRDWMFQNFLHPYPKDAEKHLLAIKSGLTRSQVSNWFINARVRLWKPLIEEMYAEMNRRKACRNEGENESSERSRISINNQMFNIN 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05406 524 Gene3D - 416 500 - -
Vivi4g05406 524 Pfam Homeobox KN domain 442 481 IPR008422 GO:0003677|GO:0006355
Vivi4g05406 524 MobiDBLite consensus disorder prediction 275 314 - -
Vivi4g05406 524 MobiDBLite consensus disorder prediction 501 524 - -
Vivi4g05406 524 SUPERFAMILY Homeodomain-like 427 494 IPR009057 -
Vivi4g05406 524 CDD homeodomain 425 485 IPR001356 GO:0003677
Vivi4g05406 524 ProSiteProfiles 'Homeobox' domain profile. 422 485 IPR001356 GO:0003677
Vivi4g05406 524 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 139 508 - -
Vivi4g05406 524 Pfam Associated with HOX 244 381 IPR006563 -
Vivi4g05406 524 SMART HOX_1 425 489 IPR001356 GO:0003677
Vivi4g05406 524 MobiDBLite consensus disorder prediction 48 67 - -
Vivi4g05406 524 SMART prehox3 238 382 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05406 Vivi-Chr4 187790393 187793308 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05406 184 498 Homeobox Transcription Factor Family AT4G32980 57.321 7.52e-108 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vivi4g05406 POX 1.2e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05406 - - gmx:100812648 611.298
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05406 4 187790393 187793308 Vivi4g05406 4 187790393 187793308 ECH
Vivi4g05406 4 187790393 187793308 Vivi4g05406 4 187790393 187793308 PCT