Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05395 ATGCCGAAAATGAAGCATCTACTGAGAAAGCTTCACATCGGTGGTGGCGCTGCTACAATCAATAATCATAATCCAAACGCAGCATTGCAGCTTTCTCATTCTGATTCTCACACTACCACGGCTCCTCTTCCTTCTTCGTCTAATGCTTCTCTGTCTCCATCTCCTTCTCCTTCACCGTCTCCCTCTCCGACCGTTGTGCAGAACCCTACAAACGACGTCGTCGACCGAGGTGTTGCGGATTTCAATCTTTTGCAGGAGGAAGAGTTTCAGGTTCAATTGGCGCTTGCGATTAGTGCTTCGGATTCCGATCCTCATGATGTGGATGAATCTGCTCAGATCGATGCTGCTAAACAGATCAGCCTTGGATATTCTGCTTCTCTTACGGATACTCCCGCGCTTGTTCAGTTTCAATCGCTGCGTTATTGGAATTACAATGTAATTGCTTATGACGAGAAAGTGATGGATGGGTTTTATGATGTCTATGGGATCGACTCAAGTTTAATTGAACGTGGAAAGATGCCATTGTTGGTCGATCTGAAAACCGTGCCCACCTCACGAAATGTTGATTATGAAGTAATCTCGGTGAACCGCATTGTTGATGTTGAGCTAAGTCAGCTTGAGAAAAAAGCCTGTGCCTTGTTTGAAGAGTGTTCTGTTTCTGAACTAGGATTGTTTTTGAGTGGCTTAATTCAGAAACTTGCTGATGTTGTTGTTAGTAGAATGGGTGGACCGGTTAGTAATGCTGATCAAATCATGGAAAAGTGGACTATGAAGAGTCGTGAATTGCGAGATTCTTTAAGAACTGTTGTCCTTCCTCTTGGCTGTCTAGATGTTGGACTTTCACGTCACCGTGCCCTACTTTTTAAGGTACTTGCTGATAGGATTAATATTCCCTGCATGCTTGTAAAAGGGAGCTATTACACAGGAACTGATGATGGGGCTGTGAACTTGATTAAAGCTGATGATGGAAGTGAATACATTATTGATATGATGGGTGCTCCTGGTACTCTTATACCTGCTGAGGTGCCCAGCAGTCAGATCCAAAACTATGGTTTTGCCGGTAGGGATTTCACAGAGATTGCAGAACAGCCTAACAACTTATACCAAATACTTGGTGATGAAACTGGTGTGCTGGGAGTATTGTCTGATTGTAATGTAGGGAGGGTCCAGACAAAAGAGTTAGTACAAATCGGCAGTCAAACAAAACCAGGTGAAATGAATCATGTTAAGGTAAATGAAGCAGGGAGATTTGAGCATACAGAAGCATATGCATGCTCATCACATTCAGAGTCATCACATGCTGAAAACATGCATGTAAAAAATGTTTCCAAGTATGTTCTCAGTGCTGCAAAGAACCCAGAGTTTGCCTCAAAACTGCACACCATTCTGTTAGAAAGCGGTGCATCACCTCCTTCTGATCTTTTTTCAAATATGAATTCTCGAGATAGGGGTTTAGATACTGTTCAAGCTGATCCAAATAGGCTGTTATTACTAAATTATGATAAGTCTCTCATACTCCCTCAAGGAGTGGGCTCTTCTGATAATACTAGGTTATGTCAATCGGCTGACCAGTTAGCCGAACAGCCAAAGGAATTCCGCGCAGATGCCAATGAATTTTATGATTCTTCTCAGATTATTAGCACAAGGAATCCTTTTGCAACTGTTTCCGGTAAAGAAGGTGATATACAACAATCTAATCCATTAATTGTTGACTTTGCTTCTCTTAGTACTTGTAACACGTGTAAAGAAAAGTGTCCCGAGTCTTCCTCGTCCAAGGCAGTCTTTTCTTGCAAAAGGCACAATGGCGTTGAATGTTTTTGTGATAATGATGAAAGTGGTCCTAGAAATGAGGCTGGAGCTTCTTTGAATAACATTGAACTTGGGACTGATTCAGTCATTCAAATAAACGAGACAGTTGATGGAGATTGTATCCTACATGATGATGGTAAAAGCAAGAAAGTTCACCCAATACTTGGTGAAGACACACAATGGGAAATTCAATGGGAGGATCTTCGTATCGGCGAGCGTATTGGTATTGGTTCTTATGGTGAAGTTTACCGTGCTGATTGCAATGGCACTGAAGTTGCTGTTAAGAAGTTTCTAGACCAAGATGTCTCTGGTGATGCACTAGATCAGTTCAAATCGGAAATTGAGATTATGTTAAGGCTGAGGCATCCTAATGTTGTGCTCTTCATGGGAGCAATTACCCGTCCGCCACATTTCTCTATCTTGACCGAGTTTCTTCCTAGAGGCAGTTTATATGGGCTATTGCATCGTCCCAAACTTGTACTTGATGAGAAGAGACGGTTGCGTATGGCTCTTGATGTGGCTAAGGGAATGAATTACTTGCACACCAGTCATCCTCCTGTTGTCCATCGAGATTTGAAGTCTCCAAACCTTCTTGTTGACAGGCATTGGGTTGTAAAGGTCTGTGATTTTGGTCTGTCACGTATGAAGCACCATACATATTTGTCATCGAAGTCGTGTGCTGGAACGCCTGAGTGGATGGCGCCAGAAGTCTTACGGAATGAGCCTGCCAATGAGAAGTGTGATGTGTATAGTTTTGGTGTGATCTTGTGGGAGTTAACTACAACGAAAATCCCATGGCATGGTTTGAACCCAATGCAGGTTGTTGGAGCTGTTGGATTCCAAAATAAACGTCTTGAAATTCCAGAAGATATGGATCCAGTGGTAGCTCAAATAATACGTGACTGCTGGCAAAGGGAGCCACACTTGCGGCCATCTTTCTCACAGCTGATGTCTCGTCTTTACCGTCTTCGCCAATTGGTTGCCCGTAATAAGACGGGCTCTACTAGTTAA 2820 0.4291 MPKMKHLLRKLHIGGGAATINNHNPNAALQLSHSDSHTTTAPLPSSSNASLSPSPSPSPSPSPTVVQNPTNDVVDRGVADFNLLQEEEFQVQLALAISASDSDPHDVDESAQIDAAKQISLGYSASLTDTPALVQFQSLRYWNYNVIAYDEKVMDGFYDVYGIDSSLIERGKMPLLVDLKTVPTSRNVDYEVISVNRIVDVELSQLEKKACALFEECSVSELGLFLSGLIQKLADVVVSRMGGPVSNADQIMEKWTMKSRELRDSLRTVVLPLGCLDVGLSRHRALLFKVLADRINIPCMLVKGSYYTGTDDGAVNLIKADDGSEYIIDMMGAPGTLIPAEVPSSQIQNYGFAGRDFTEIAEQPNNLYQILGDETGVLGVLSDCNVGRVQTKELVQIGSQTKPGEMNHVKVNEAGRFEHTEAYACSSHSESSHAENMHVKNVSKYVLSAAKNPEFASKLHTILLESGASPPSDLFSNMNSRDRGLDTVQADPNRLLLLNYDKSLILPQGVGSSDNTRLCQSADQLAEQPKEFRADANEFYDSSQIISTRNPFATVSGKEGDIQQSNPLIVDFASLSTCNTCKEKCPESSSSKAVFSCKRHNGVECFCDNDESGPRNEAGASLNNIELGTDSVIQINETVDGDCILHDDGKSKKVHPILGEDTQWEIQWEDLRIGERIGIGSYGEVYRADCNGTEVAVKKFLDQDVSGDALDQFKSEIEIMLRLRHPNVVLFMGAITRPPHFSILTEFLPRGSLYGLLHRPKLVLDEKRRLRMALDVAKGMNYLHTSHPPVVHRDLKSPNLLVDRHWVVKVCDFGLSRMKHHTYLSSKSCAGTPEWMAPEVLRNEPANEKCDVYSFGVILWELTTTKIPWHGLNPMQVVGAVGFQNKRLEIPEDMDPVVAQIIRDCWQREPHLRPSFSQLMSRLYRLRQLVARNKTGSTS 939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05395 939 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 77 933 - -
Vivi4g05395 939 MobiDBLite consensus disorder prediction 27 71 - -
Vivi4g05395 939 Gene3D Phosphorylase Kinase; domain 1 664 748 - -
Vivi4g05395 939 ProSiteProfiles Protein kinase domain profile. 671 925 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g05395 939 FunFam Serine/threonine-protein kinase isoform 1 661 749 - -
Vivi4g05395 939 FunFam PAS domain-containing protein tyrosine kinase family protein 749 938 - -
Vivi4g05395 939 SMART serkin_6 671 930 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g05395 939 CDD STKc_MAP3K-like 677 923 - -
Vivi4g05395 939 ProSitePatterns Serine/Threonine protein kinases active-site signature. 790 802 IPR008271 GO:0004672|GO:0006468
Vivi4g05395 939 PRINTS Tyrosine kinase catalytic domain signature 745 758 IPR001245 GO:0004672|GO:0006468
Vivi4g05395 939 PRINTS Tyrosine kinase catalytic domain signature 831 841 IPR001245 GO:0004672|GO:0006468
Vivi4g05395 939 PRINTS Tyrosine kinase catalytic domain signature 894 916 IPR001245 GO:0004672|GO:0006468
Vivi4g05395 939 PRINTS Tyrosine kinase catalytic domain signature 850 872 IPR001245 GO:0004672|GO:0006468
Vivi4g05395 939 PRINTS Tyrosine kinase catalytic domain signature 784 802 IPR001245 GO:0004672|GO:0006468
Vivi4g05395 939 ProSitePatterns Protein kinases ATP-binding region signature. 677 699 IPR017441 GO:0005524
Vivi4g05395 939 SUPERFAMILY Protein kinase-like (PK-like) 661 924 IPR011009 -
Vivi4g05395 939 Gene3D Transferase(Phosphotransferase) domain 1 750 935 - -
Vivi4g05395 939 Pfam Ethylene-responsive protein kinase Le-CTR1 135 338 - -
Vivi4g05395 939 Pfam Protein tyrosine and serine/threonine kinase 671 923 IPR001245 GO:0004672|GO:0006468
Vivi4g05395 939 MobiDBLite consensus disorder prediction 27 53 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05395 Vivi-Chr4 187639089 187647266 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05395 1 938 MAP Kinase Kinase Kinase AT5G11850 53.571 0.0 917
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Vivi4g05395 PK_Tyr_Ser-Thr 2.8e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05395 K04424 - gmx:100779137 1328.92