Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05390 ATGACTCCTGTAACTCCGAATCAACCAGGTTCCAAGTCCTTGCAACAAGGTCAAAACCAGTCCTTAGATGTTTCTCCTGTTAAACAGGACTGTCCTACCTTGTTTAATTTTCTTGATCAGTTTCAAGGAAATCATGATCCTAAGGATCATAAACTGGGACCTCATTATGGTGGATCATCATCATCAACCAATCATCTACAACTCTATAATTCATCGAGTGGTGCAGCTATGGTTGATCAAAGCATTCCGCGTGACACAAATCTACCATCATCCATGGAGGTGGAAGATAGCGGCAAAAGAAATGACAAATGGGTGTCTTCAAAGGCGAGGTTGATGAAAATGCTGATGATACCTGAAAGAAGTTATGGAGACATAAATGAAGACAAAGCAATTGTCAATGCAACTGCTAGTGCTGCTGCCACAACTCCTTCAAATGAAGGAATTCAAAATGAAAGGTACAATCAAGGAAGCCTTACTTCTAGGGTTTGTACTGAGTGTCAAACTACCTCTACCCCACTTTGGAGGAGTGGCCCTGTGGGTCCTAAGACACTTTGCAATGCTTGTGGAATTAGGCAGAGGAAGGCAAGAAGGGCTGCTGTAGAGGCTGATAATAGTTTGGGACATGGCAAAGAGAAAGAAGAGAAACTTCTTGTGAACAAATGTACACAATTCAAGAAGAACAAGACTTCTTCAACTTCAACTAGTGCTGCTGCTACTATTACTGCTACGACTACTAATGATAGTAGCTTATCTGAAGAGATGATGGAGAGACTTGATTTTTTCTTAACAAAGGTGAGGAAAAAATCGGGTTTTGAGTCTACTACCGAGGAAGTAGCTGATACAGCTCTACTTCTGATGGATATCTCTTGTGGGTATGTTTACCCTTAA 888 0.4122 MTPVTPNQPGSKSLQQGQNQSLDVSPVKQDCPTLFNFLDQFQGNHDPKDHKLGPHYGGSSSSTNHLQLYNSSSGAAMVDQSIPRDTNLPSSMEVEDSGKRNDKWVSSKARLMKMLMIPERSYGDINEDKAIVNATASAAATTPSNEGIQNERYNQGSLTSRVCTECQTTSTPLWRSGPVGPKTLCNACGIRQRKARRAAVEADNSLGHGKEKEEKLLVNKCTQFKKNKTSSTSTSAAATITATTTNDSSLSEEMMERLDFFLTKVRKKSGFESTTEEVADTALLLMDISCGYVYP 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05390 295 Pfam GATA zinc finger 163 196 IPR000679 GO:0006355|GO:0043565
Vivi4g05390 295 CDD ZnF_GATA 162 194 IPR000679 GO:0006355|GO:0043565
Vivi4g05390 295 MobiDBLite consensus disorder prediction 81 101 - -
Vivi4g05390 295 ProSitePatterns GATA-type zinc finger domain. 163 188 IPR000679 GO:0006355|GO:0043565
Vivi4g05390 295 MobiDBLite consensus disorder prediction 1 27 - -
Vivi4g05390 295 ProSiteProfiles GATA-type zinc finger domain profile. 157 193 IPR000679 GO:0006355|GO:0043565
Vivi4g05390 295 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 159 196 - -
Vivi4g05390 295 Gene3D - 156 203 IPR013088 GO:0006355|GO:0008270
Vivi4g05390 295 SMART GATA_3 157 208 IPR000679 GO:0006355|GO:0043565
Vivi4g05390 295 MobiDBLite consensus disorder prediction 1 67 - -
Vivi4g05390 295 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 41 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05390 Vivi-Chr4 187568084 187569753 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05390 86 192 C2C2-Gata Transcription Factor Family AT4G26150 42.857 9.41e-19 83.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vivi4g05390 GATA 4e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05390 - - vvo:131598535 515.383