Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05386 ATGACTCCTTTAACTCCGAATCAACCAAGTCCTAAGCAACAAGGTCAAAACCAATCCTTAGATGTTTCTCCTGTTAAACAGGACTGTCCTACGCTGTTTAATTTTCTTGATCAATTTCAAGAAAATCGTGATCCTAAGGATCATAAGCTGGGATTTCATTATGGTGGATCATCATCGTCAACCAATCATCTACAACTCTATAATTCATCGAGTGGTGCAACTATGGTTGATCAAAGCATTCCGCGAGACACAAATTTACCATCATCCATGGAGGTGGAAGATAGCAGCAAAAGAAATGACAAATGGGTGTCTTCAAAGGCGGGGTTGATGAAAATGCTGATGATACCAGAAAGCAATTATGGAGACATCAACGAAGACAAGGCAATTATCAATGCAACTGCTAGTGCTGCTGCCTCAACTCCTTCAAATGAAGGAATTCAAAATGAAAGGTACAATCAAGGAAGCCCTACTGCTAGGGTTTGTACTGAGTGTCAAACTACCTCTACCCCACTTTGGAGGAGTGGCCCTGTGGGTCCTAAGGCACTTTGCAATGCTTGTGGAATTAGGCAGAGGAAGGCAAGAAGGGCTGCTGTAGAGGCTGATAATAGTTTGGGACATGGCAAAGAGAAAGAAGAGAAGCTTCTTGTGAACAAATGTACACAGTTCAAGAAGAAGAACAACACTGCTTCAACTTCAACTAGTGCTGCTACTACTACTGATAGTAGCTTATCTGAAGAAATGATGGAGAGACTTGGTTTTTTCTTAACAAAGGTGAGGAAAAAATCGGGTTTCGAGTCTACTACTGAGGAAGTAGCTGATACTGCACTACTTCTAATGGATATCTCTTGTGGTTATGTTTACCCTTAA 867 0.4129 MTPLTPNQPSPKQQGQNQSLDVSPVKQDCPTLFNFLDQFQENRDPKDHKLGFHYGGSSSSTNHLQLYNSSSGATMVDQSIPRDTNLPSSMEVEDSSKRNDKWVSSKAGLMKMLMIPESNYGDINEDKAIINATASAAASTPSNEGIQNERYNQGSPTARVCTECQTTSTPLWRSGPVGPKALCNACGIRQRKARRAAVEADNSLGHGKEKEEKLLVNKCTQFKKKNNTASTSTSAATTTDSSLSEEMMERLGFFLTKVRKKSGFESTTEEVADTALLLMDISCGYVYP 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05386 288 SMART GATA_3 155 206 IPR000679 GO:0006355|GO:0043565
Vivi4g05386 288 Pfam GATA zinc finger 161 194 IPR000679 GO:0006355|GO:0043565
Vivi4g05386 288 CDD ZnF_GATA 160 192 IPR000679 GO:0006355|GO:0043565
Vivi4g05386 288 Gene3D - 155 201 IPR013088 GO:0006355|GO:0008270
Vivi4g05386 288 ProSiteProfiles GATA-type zinc finger domain profile. 155 191 IPR000679 GO:0006355|GO:0043565
Vivi4g05386 288 MobiDBLite consensus disorder prediction 74 92 - -
Vivi4g05386 288 ProSitePatterns GATA-type zinc finger domain. 161 186 IPR000679 GO:0006355|GO:0043565
Vivi4g05386 288 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 42 286 - -
Vivi4g05386 288 MobiDBLite consensus disorder prediction 74 99 - -
Vivi4g05386 288 MobiDBLite consensus disorder prediction 1 25 - -
Vivi4g05386 288 MobiDBLite consensus disorder prediction 7 25 - -
Vivi4g05386 288 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 154 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05386 Vivi-Chr4 187511861 187513447 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05386 159 287 C2C2-Gata Transcription Factor Family AT5G49300 35.606 1.96e-18 78.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vivi4g05386 GATA 1.1e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05386 - - vvo:131598535 500.745