Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05383 ATGACTCCTTTAACTCCGAATCAACCAAGTCCTAAGCAACAAGGTCAAAACCAATCCTTAGATGTTTCTCCTGTTAAACAGGACTGTCCTACCTTGTTTAATTTTCTTGATCAGTTTCAAGGAAATCATGATCCTAAGGATCATAAGCTGGGACTTCATTATGGTGGATCATCATCATCAACCAATCACCTACAACTCTATAATTCATCGAGTGGTGCAGCTATGGTTGATCAAAGCATTGTGCGTGACACAAATTTACCATCAGACATGGAGGTGGAAGATAGCGGCAAAAGAAATGACAAATGGGTGTCTTCAAAGGCGAGGTTGATGAAAATGCTGATGATACCTGAAAGAAGTTATGGAGACATAAATGAAGACAAAGCAATTATCAATGCAACTGCTAGTGCTGCTGCCCCTACTCCTTCAAATGAAGGAATTCAAAATGAAAGGTACAATCAAGGAAGCCCTACTGCTAGGGTTTGTACTGAGTGTCAAACTACCTCTACCCCACTTTGGAGGAGTGGCCCCGTGGGTCCTAAGACACTTTGCAATGCTTGTGGAATTAGGCAGAGGAAGGCAAGAAGGGCTGCTGTAGATGCTGATAATAGTTTGGCACATGGCAAAGAGAAAGAAGAGAAACTTCTTGTGAACAAATGTACACAATTCAAGAAGAACAAGACTTCTTCAACTTCAACTAGTGCTGCTACTACGACTACTAATGATAGTAGCTTATCTGAAGAGATGATGGAGAGGCTTGATTTTTTCTTAACAAAGGTGAGGAAAAAATCGGGTTTCGAGTCTACTACTGAGGAAGTAGCTGATACAGCTCTACTTCTGATGGATATCTCTTGTGGATTTAATGATAAGTGGTGGGACTGGTTGTGTAGTTGTGTGTTTGTTGGAAACCTTGATGTCCTGACACTTTGCAATACTTGTGGAATTAGACAGAGGAAGGCAAGAAGGGCTGCTGTAGAGGCTGACAATAATTTGGTCACTTCCACAATAATTAGAGGACATAACAAAGAGAAAGAAGAGAAGCTTCTTGTGAACAAAAGTACACAATTCAAGAAGAACAAGACTTCTTCAACTTCAACTAGTACTGCTGGTGCTGCTACTACGACTACTAATGATAGTAGCTTATCTGAAGTGATGATGGAGAGACTTGATATTTTCTTAACAAAGGTGAGGAAAAAATCGGGTTTCGAGTCTACTACTGAAGAAGTAGCTGATACAGCTCTACTTCTGATGGATATCTCTTGTGGTTATGTTTACCCTTGA 1278 0.4045 MTPLTPNQPSPKQQGQNQSLDVSPVKQDCPTLFNFLDQFQGNHDPKDHKLGLHYGGSSSSTNHLQLYNSSSGAAMVDQSIVRDTNLPSDMEVEDSGKRNDKWVSSKARLMKMLMIPERSYGDINEDKAIINATASAAAPTPSNEGIQNERYNQGSPTARVCTECQTTSTPLWRSGPVGPKTLCNACGIRQRKARRAAVDADNSLAHGKEKEEKLLVNKCTQFKKNKTSSTSTSAATTTTNDSSLSEEMMERLDFFLTKVRKKSGFESTTEEVADTALLLMDISCGFNDKWWDWLCSCVFVGNLDVLTLCNTCGIRQRKARRAAVEADNNLVTSTIIRGHNKEKEEKLLVNKSTQFKKNKTSSTSTSTAGAATTTTNDSSLSEVMMERLDIFLTKVRKKSGFESTTEEVADTALLLMDISCGYVYP 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05383 425 CDD ZnF_GATA 160 192 IPR000679 GO:0006355|GO:0043565
Vivi4g05383 425 Pfam GATA zinc finger 161 194 IPR000679 GO:0006355|GO:0043565
Vivi4g05383 425 Gene3D - 155 200 IPR013088 GO:0006355|GO:0008270
Vivi4g05383 425 ProSitePatterns GATA-type zinc finger domain. 161 186 IPR000679 GO:0006355|GO:0043565
Vivi4g05383 425 SMART GATA_3 155 213 IPR000679 GO:0006355|GO:0043565
Vivi4g05383 425 MobiDBLite consensus disorder prediction 7 24 - -
Vivi4g05383 425 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 154 193 - -
Vivi4g05383 425 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 307 423 - -
Vivi4g05383 425 ProSiteProfiles GATA-type zinc finger domain profile. 155 191 IPR000679 GO:0006355|GO:0043565
Vivi4g05383 425 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05383 Vivi-Chr4 187437569 187449683 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05383 84 190 C2C2-Gata Transcription Factor Family AT4G26150 41.964 2.39e-17 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vivi4g05383 GATA 6.5e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05383 - - vvo:131598535 790.801