Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05382 ATGTGGCTTGGAGTTGGGGATCTCTTGTCTTTAGAGGAATTTCTATATTTCTTCTATAATTGTGCGAAGATTAATTGTCTTTCTAAGAGAGCCATCTTGTCGGTAGTTTGGCTTGCGACGATTTGGACTTTGAGGAATTTCTATATTTCTTCAAATGAAGGAATTCAAAATGAAAGGTACAATCAAGGAAGCCCTACTGCTAGGGTTTGTACTGAGTGTCAAACTACCTCTACCCCACTTTGGAGGAGTGGCACCGTGGGTCCTAAGACACTTTGCAATGCTTGTGGAATTAGGCAGAGGAAGACAAGAAGGGCTGCTGTAGAGGCGGCTGATAATAGTTTGGGACATGGCAAAGCGAAAGAAGAGAAACTTCTTGTGAACAAATGTACACAATTCAAGAAGAACAAGACTTCTTCAACTTCAACTAGTACTGTTGCTGTTGCTGCTGCTGCTACTACTACGACTACTAATGATAGTAGCTTATCTGAAGAGATGATGGAGAGACTTGATTTTTTCTTAACAAAGGTGAGGAAAAAATCGGGTTTCGAGTCTACTACTGAGGAAGTAGCTGATACAACTCTACTTCTAATGGATATATCTTGTGGTTATGTTTACCCTTGA 621 0.4042 MWLGVGDLLSLEEFLYFFYNCAKINCLSKRAILSVVWLATIWTLRNFYISSNEGIQNERYNQGSPTARVCTECQTTSTPLWRSGTVGPKTLCNACGIRQRKTRRAAVEAADNSLGHGKAKEEKLLVNKCTQFKKNKTSSTSTSTVAVAAAATTTTTNDSSLSEEMMERLDFFLTKVRKKSGFESTTEEVADTTLLLMDISCGYVYP 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05382 206 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 57 204 - -
Vivi4g05382 206 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 63 104 - -
Vivi4g05382 206 Pfam GATA zinc finger 70 104 IPR000679 GO:0006355|GO:0043565
Vivi4g05382 206 CDD ZnF_GATA 69 104 IPR000679 GO:0006355|GO:0043565
Vivi4g05382 206 SMART GATA_3 64 115 IPR000679 GO:0006355|GO:0043565
Vivi4g05382 206 ProSitePatterns GATA-type zinc finger domain. 70 95 IPR000679 GO:0006355|GO:0043565
Vivi4g05382 206 Gene3D - 63 109 IPR013088 GO:0006355|GO:0008270
Vivi4g05382 206 ProSiteProfiles GATA-type zinc finger domain profile. 64 100 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05382 Vivi-Chr4 187413189 187414227 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05382 59 107 C2C2-Gata Transcription Factor Family AT5G26930 57.143 6.60e-16 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vivi4g05382 GATA 6.4e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05382 - - vvo:131598535 251.906