Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05381 ATGACTCCTTTAACTCCGAATCAACCAAGTCCTAAGCAACAAGGTCAAAACCAATCCTTAGATGTTTCTCCTGTTAAACAGGACTGTCCTACCTTGTTTAATTTTCTTGATCAGTTTCAAGGAAATCATGATCCTAAGGATCATAAGCTGGAACTTCATTATGGTGGATCATCATCAACCAATCATCAACAATTCTATAATTCATCGAGTAATTCAGCTATGGTTGATCAAAGCATTGTGCGTCGTCACACAAATTTACCATCATCCACGGAGGTGGAAGATAGCGGCAAAAGAAATGACAAATGGGTGTCTTCAAAGGCGAGGTTGATGAAAATGCTAATGATACCAGAAAGAAGTTATGGAGACATGAATGAAGACAAAGCAATTATCACTGCAACTGCTAGTGCTGCTGCCACAATTCCTTCAAATGAAGGAATTCAAAATGAAAGGTACAATCAAGGAAGCCCTACTGCTAGGGCTTGTGCTGAGTGTCAAACTACCTCTACCCCACTTTGGAGGAGTGGCCCTGTGGGTCCTAAGACACTTTGTAATGCTTGTGGAATTAGGCAGAGGAAGGCAAGAAGGGCTGCTAAAGAGGCTGAAAATAGTTTGGCGACTTCCACAAAGATTATAGGACATAACAAAGAGAAGGAAGAGAAGCTTCTTGTGAACAAATGTACACAATTCAAGAAGAATAAGACTTCTTCAACTTCAACTAGTACTGCTTCTGCTACTATGACTACTAATGATAGTAGCTTATCTGAAGAGATGATGGAGAGACTTGATTTTTTCTTAACAAAGGTGAGGAAAAAATCGGGTTTCGAGTCTACTACTGAGGAAGTAGCTGATACAGCTCTACTTCTGATGGATATATCTTGTGGTTATGTTTATCCTTGA 897 0.398 MTPLTPNQPSPKQQGQNQSLDVSPVKQDCPTLFNFLDQFQGNHDPKDHKLELHYGGSSSTNHQQFYNSSSNSAMVDQSIVRRHTNLPSSTEVEDSGKRNDKWVSSKARLMKMLMIPERSYGDMNEDKAIITATASAAATIPSNEGIQNERYNQGSPTARACAECQTTSTPLWRSGPVGPKTLCNACGIRQRKARRAAKEAENSLATSTKIIGHNKEKEEKLLVNKCTQFKKNKTSSTSTSTASATMTTNDSSLSEEMMERLDFFLTKVRKKSGFESTTEEVADTALLLMDISCGYVYP 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05381 298 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 154 195 - -
Vivi4g05381 298 CDD ZnF_GATA 160 192 IPR000679 GO:0006355|GO:0043565
Vivi4g05381 298 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 40 296 - -
Vivi4g05381 298 ProSitePatterns GATA-type zinc finger domain. 161 186 IPR000679 GO:0006355|GO:0043565
Vivi4g05381 298 Gene3D - 155 203 IPR013088 GO:0006355|GO:0008270
Vivi4g05381 298 SMART GATA_3 155 207 IPR000679 GO:0006355|GO:0043565
Vivi4g05381 298 Pfam GATA zinc finger 161 194 IPR000679 GO:0006355|GO:0043565
Vivi4g05381 298 MobiDBLite consensus disorder prediction 1 25 - -
Vivi4g05381 298 ProSiteProfiles GATA-type zinc finger domain profile. 155 191 IPR000679 GO:0006355|GO:0043565
Vivi4g05381 298 MobiDBLite consensus disorder prediction 233 252 - -
Vivi4g05381 298 MobiDBLite consensus disorder prediction 7 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05381 Vivi-Chr4 187403536 187405278 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05381 84 190 C2C2-Gata Transcription Factor Family AT4G26150 44.737 1.11e-18 83.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vivi4g05381 GATA 2.8e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05381 - - vvo:131598533 562.762