Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05380 ATGGTTGAACAAAGCATTGCGCGTGACACTAATTTACCATCATCGATGGAGGTGGAAGATAGCGGCAAAAGAAATGACAAATGGGTGTCTTCAAAGGCGAGGTTGATGAGAATGTTGATGATACCAGAAAGCAGTTATGGAGACATAAATGAAGACAAAGCAATTATCAATGAAACTGCTAGTGATGCTGCCACAACTCCTTCAAATGAAGGAATTCAAAATGAAAGTTACAATCAAGGAAGCCCTACTGCTAGGGCTTGTGCTGAGTGTCAAACTACCTCTACCCCACTTTGGAAGAGTGGCCCTGTGGGTCCTAAGACACTTTGCAATGCTTGTGGAATTAGGCAGAGGAAGGCAAGAAGGGCTGCTAAAGAGGCTGAAAATAGTTTGGCGACTTCCACAAAGATTATAGGACATAACAAAGAGAAGGAAGAGAAGCTTCTTGTGAACAAATGTACACAATTCAAGAAGAGCAAGACTTCTTCAACTTCAACTAGTACTGCTTCTGCTGCTATGACTACTAATGATAGTAGCTTATCTGAAGAGATGATGGAGAGACTTGATTTTTTCTTAACAAAGGTGAGGAAAAAATCGGGTTTCGAGTCTACTACTGAGGAAGTAGCTGATACAGCTCTACTTCTGATGGATATATCTTGTGGTTATGTTTATCCTTAA 675 0.4074 MVEQSIARDTNLPSSMEVEDSGKRNDKWVSSKARLMRMLMIPESSYGDINEDKAIINETASDAATTPSNEGIQNESYNQGSPTARACAECQTTSTPLWKSGPVGPKTLCNACGIRQRKARRAAKEAENSLATSTKIIGHNKEKEEKLLVNKCTQFKKSKTSSTSTSTASAAMTTNDSSLSEEMMERLDFFLTKVRKKSGFESTTEEVADTALLLMDISCGYVYP 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05380 224 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 81 121 - -
Vivi4g05380 224 CDD ZnF_GATA 86 118 IPR000679 GO:0006355|GO:0043565
Vivi4g05380 224 MobiDBLite consensus disorder prediction 1 18 - -
Vivi4g05380 224 Pfam GATA zinc finger 87 120 IPR000679 GO:0006355|GO:0043565
Vivi4g05380 224 ProSiteProfiles GATA-type zinc finger domain profile. 81 117 IPR000679 GO:0006355|GO:0043565
Vivi4g05380 224 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 19 222 - -
Vivi4g05380 224 MobiDBLite consensus disorder prediction 1 25 - -
Vivi4g05380 224 SMART GATA_3 81 133 IPR000679 GO:0006355|GO:0043565
Vivi4g05380 224 Gene3D - 82 146 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05380 Vivi-Chr4 187397446 187398840 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05380 10 116 C2C2-Gata Transcription Factor Family AT4G26150 42.982 4.12e-19 82.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vivi4g05380 GATA 1.9e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05380 - - vvo:131600559 405.601