Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05366 ATGATGAAAGGTTTGTCCATAGATGAAAACATGTCAAATTTGACATCTGCTTCAAGTGAAAAAAGTGCTTCTTCAGCAACCAAGAATGAAAAGGCAAATCTAGAACCACAAACCAAAAGGAAGAGAAATCTTCCAGGCCATCCAGACCCTGATGCAGAAGTAATAGCCTTGAGTCCCCAAACTCTCTTGGCAACAAACAGGTTCATTTGTGAGATTTGTAACAAAGGATTCCAAAGAGATCAAAATCTTCAGCTTCACAAAAGAGGACATAACTTACCATGGAAGCTAAAGAAAAGAAACAGCAATGAAATCATAAGGAAGAAAGTGTATGTGTGTCCAGAGACAGCATGTGTTCACCATGACCCTTCAAGAGCATTAGGAGACCTCACTGGAATCAAGAAGCACTTTTTCAGAAAGCATGGTGAGAAGAAATGGAAGTGTGAAAAGTGTTCCAAACGTTATGCAGTTCAATCTGATTGGAAAGCTCATTCCAAAATTTGTGGCACTAAAGAGTATAAGTGTGAATGTGGAACCCTTTTCTCAAGAAGGGACAGTTTTATCACTCATAGGGCCTTTTGTGATGTTCTATCACATGAGAGTGCAATGTCAATGTCAGGAGTGAACCCTCTATTCTCTCATCATTCACAATTTCATAGCCATGGTTTTCAACCACCATCCCTAAAAAAAGAACAAGACTTCAATTCAAGATCTTCAGAAATACCATCATGGTTATTCCAAACTCATATGAACCATTATGATCAAAACCCTAACCCTACAAATCTCTTTCCTTCAAATTTCAACTCAAACAATATAATGACTACTTCTTCTCCACACATGTCAGCCACTAGTTTACTGCAAAAAGCATCACAAATAGGTGTAACAGTAAGCAAAACTGATCAAGAACATTGTAGGTCCTCCTCCCAGTTAATGCAAACTCACGTGCCTTTTGAATATAAAACACTATACATGAATTCATCTTCACCTGTTTCTGGAATAGTTATGCCTTCACGTGAAGAAATAGCGACTGGTTTTTCTCATTGTTTGGCTCCATATGGGAATAAAGCTGCAATAGCCTCTGAATGCTTTGAAGAAGGTGTCACTGTTACTGCAACTGCTACAAACACAGAAGAATCTTCTCTTTTGCATGATGTGATATATGGTAATGAAAGCTCACAATTTGAAGGTGTTGTTACTACCATGAGAGGAATGTTTGATACACAAAGAGGTAGTAGTGATAATAATAATAATAACTTTGAGGACTTTGTTTCCAAATCAACACAAGCACAATATTCCCAATTTGGTAAAAGCAACAATGATGATGAAATGACAAGGGACTTTTTGAGTCTTGGTGCATTTTCACAAAGAGATTTCTTCAATATATCTGGAATTAATGATGATCCTTTGGGTTCTTTATCTTATGGTAAGCAAAATCATAGTCAAAATCCTTGGAGAGGCTAA 1458 0.3717 MMKGLSIDENMSNLTSASSEKSASSATKNEKANLEPQTKRKRNLPGHPDPDAEVIALSPQTLLATNRFICEICNKGFQRDQNLQLHKRGHNLPWKLKKRNSNEIIRKKVYVCPETACVHHDPSRALGDLTGIKKHFFRKHGEKKWKCEKCSKRYAVQSDWKAHSKICGTKEYKCECGTLFSRRDSFITHRAFCDVLSHESAMSMSGVNPLFSHHSQFHSHGFQPPSLKKEQDFNSRSSEIPSWLFQTHMNHYDQNPNPTNLFPSNFNSNNIMTTSSPHMSATSLLQKASQIGVTVSKTDQEHCRSSSQLMQTHVPFEYKTLYMNSSSPVSGIVMPSREEIATGFSHCLAPYGNKAAIASECFEEGVTVTATATNTEESSLLHDVIYGNESSQFEGVVTTMRGMFDTQRGSSDNNNNNFEDFVSKSTQAQYSQFGKSNNDDEMTRDFLSLGAFSQRDFFNISGINDDPLGSLSYGKQNHSQNPWRG 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05366 485 FunFam protein indeterminate-domain 5, chloroplastic-like 123 202 - -
Vivi4g05366 485 Pfam Zinc-finger double-stranded RNA-binding 68 90 IPR022755 -
Vivi4g05366 485 ProSitePatterns Zinc finger C2H2 type domain signature. 70 90 IPR013087 -
Vivi4g05366 485 FunFam protein indeterminate-domain 12-like 47 116 - -
Vivi4g05366 485 MobiDBLite consensus disorder prediction 1 53 - -
Vivi4g05366 485 MobiDBLite consensus disorder prediction 33 48 - -
Vivi4g05366 485 Gene3D Classic Zinc Finger 48 118 - -
Vivi4g05366 485 SUPERFAMILY beta-beta-alpha zinc fingers 67 165 IPR036236 -
Vivi4g05366 485 SMART c2h2final6 110 140 IPR013087 -
Vivi4g05366 485 SMART c2h2final6 68 90 IPR013087 -
Vivi4g05366 485 SMART c2h2final6 145 165 IPR013087 -
Vivi4g05366 485 MobiDBLite consensus disorder prediction 8 32 - -
Vivi4g05366 485 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 90 IPR013087 -
Vivi4g05366 485 Gene3D Classic Zinc Finger 123 203 - -
Vivi4g05366 485 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 18 455 IPR031140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05366 Vivi-Chr4 187165214 187168384 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05366 7 298 IDZ Gene Family AT1G55110 58.182 3.66e-118 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi4g05366 zf-C2H2_jaz 4.9e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05366 K25870 - vvi:100257789 452.21